Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0963 ATGTCGGGTGTTGGCCCTCTGTCTCAGGATTGGGAACCCGTCGTCCTCCGCAAGAAAGCTCCCAATGCCGCCGCCAAAAAGGACGAGAAAGCCGTCAACGCCGCCCGCCGCGCCGGCGCCGACATCGAAACCCTAAAAAAATATAATGCTGGGACAAACAAAGCAGCATCTAGCAGCACTTCATTTAACACTAAGAGGTTGGATGATGATACCGAGAGTCTAGCTCATGACAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGGACAAGAAACTTACACAGGCTCAGCTAGCCCAGCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTACGAATCAGGGAAGGCCATTCCAAACCAGCAGATCATTGGCAAGTTGGAAAGAGCCCTTAGTGCTAAACTGCGTGGCAAGAAATAA 429 0.5012 MSGVGPLSQDWEPVVLRKKAPNAAAKKDEKAVNAARRAGADIETLKKYNAGTNKAASSSTSFNTKRLDDDTESLAHDKVPTELKKAIMQARMDKKLTQAQLAQLINEKPQVIQEYESGKAIPNQQIIGKLERALSAKLRGKK 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0963 142 Coils Coil 87 107 - -
Aed5g0963 142 Pfam Multiprotein bridging factor 1 9 79 IPR013729 -
Aed5g0963 142 MobiDBLite consensus disorder prediction 53 73 - -
Aed5g0963 142 Gene3D - 71 142 IPR010982 GO:0003677
Aed5g0963 142 PANTHER MULTIPROTEIN BRIDGING FACTOR 1B 1 142 - -
Aed5g0963 142 CDD HTH_XRE 85 134 IPR001387 -
Aed5g0963 142 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 1 142 - -
Aed5g0963 142 Pfam Helix-turn-helix 87 134 IPR001387 -
Aed5g0963 142 ProSiteProfiles Cro/C1-type HTH domain profile. 87 134 IPR001387 -
Aed5g0963 142 SMART mbf_short4 86 141 IPR001387 -
Aed5g0963 142 SUPERFAMILY lambda repressor-like DNA-binding domains 81 136 IPR010982 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0963 Aed-Chr5 7472770 7477092 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Aed5g0963 MBF1 2.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0963 K03627 - gmx:100500420 264.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0963 5 7472770 7477092 Aed5g0963 5 7472770 7477092 ECH