Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0936 ATGCCGTCATCGAGGGTGCCATCGTCAAGGGTGAAGTGCAACTGGGTTCGTGGAAAATCTCTTGGAAGTGGCAGCTGTGGCTCGGTCAACATAGTCATACCAAAAAACACTTCCACATATATTCCACCACCCACCGCGGTCAAATCCTCCATTGTCAATAAGTCGTATACGCTTGTGATGGAGGAGTACGTGCTTCACTTTCTCGGACCGTCCCCTTACATCATCAAATGTTATGGGCACGAACTCACTGTTGAAAACGGGAAATCATTATACAATATTTTCCTCGAATATGCCGACGGTGGTTCCCTCTACGATCACATCATCAATCGTGGCGGAGGGGGGCTTCCGGAGGCTTGCGTACGACAATACACCAGGGCCATTGCAGAGGGTCTGAGACACATTCATTCCAAAGGCTTCGTCCACTGCGATGTGAAGCCTGAAAACATTCTCCTTTTCAACCACGGTGCCATTAAGATTGCAGATTTTGGGCTGGCAAAGATAAAAGGAGAGATTAACACCGAGTATCGTCGCAGAGGGACACCCATGTACATGTCTCCGGAATCAGTGAATCGGAATGAGTATGAGTGGCCTGTAGATATATGGGCTCTCGGTTGCACTGTGGTAGAAATGATATCAGGAGCAAACGTCTGGGATGTGGGTGACGGGGAGATTAAGACGTGGACACCGTTGCTGAATCGGATAGGGAAGGGAAAAGAAATGCCTAACATTCCAAAAGAGTTATCAATAGAAGGAAAAGATTTTCTGGATAAGTGTCTTGTTAAAGATCCCCAGAAGAGGTGGACTGCTGAAATGCTTATCAACCACCCTTTCATCAAGAACAGCAACCCATCCTCAGCATCAAACAACCCATCATCATTAAGTAAGGATCAAATCATTCCCTAA 903 0.4673 MPSSRVPSSRVKCNWVRGKSLGSGSCGSVNIVIPKNTSTYIPPPTAVKSSIVNKSYTLVMEEYVLHFLGPSPYIIKCYGHELTVENGKSLYNIFLEYADGGSLYDHIINRGGGGLPEACVRQYTRAIAEGLRHIHSKGFVHCDVKPENILLFNHGAIKIADFGLAKIKGEINTEYRRRGTPMYMSPESVNRNEYEWPVDIWALGCTVVEMISGANVWDVGDGEIKTWTPLLNRIGKGKEMPNIPKELSIEGKDFLDKCLVKDPQKRWTAEMLINHPFIKNSNPSSASNNPSSLSKDQIIP 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0936 300 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Aed5g0936 300 Gene3D Phosphorylase Kinase; domain 1 9 103 - -
Aed5g0936 300 SMART serkin_6 15 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g0936 300 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 14 283 - -
Aed5g0936 300 MobiDBLite consensus disorder prediction 278 300 - -
Aed5g0936 300 CDD STKc_MAPKKK 14 278 - -
Aed5g0936 300 Gene3D Transferase(Phosphotransferase) domain 1 104 298 - -
Aed5g0936 300 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 14 283 - -
Aed5g0936 300 ProSiteProfiles Protein kinase domain profile. 15 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g0936 300 Pfam Protein kinase domain 17 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g0936 300 SUPERFAMILY Protein kinase-like (PK-like) 12 286 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0936 Aed-Chr5 7233299 7234201 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0936 15 278 MAP Kinase Kinase Kinase AT3G50310 52.416 2.20e-94 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Aed5g0936 Pkinase 2.8e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0936 - - gmx:100816949 370.548