Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0932 ATGGAAATGGAGGATTTTTTATGGGGTGTTGCCATTGATGAAGATGCCCCAAAGTGGAAAAGTGACGGTTTTGAAGGAAGCAACGTGATTGGAAGTGGGTGTGGTTCCTCTTTCTCTCTGGTTTTGGATAGGGAGAGAGGGGAGCTTGTGGAAGCACCTGTGAAATTGGAAAGGAAGGGGATTTCCACTGAGAGAAGCATTGAAGCATTGAGGAGCCATAGTGAGGCAGAGAGGAAAAGAAGGGCAAGGATTAATACACATCTTGATACACTTCGCAGTGCGATTCCGGGTGCTCTTAAGATGGACAAAGCGTCATTACTTGGTGAGGTTATTAGACATTTGAAAGAGCTGAAGAAGAATGCAGCACAAGCTTGTGAAGGTTTGATGATACCAAAGGACAATGATGAAATAAGTGTTGAAGAACACGAGGGTGGTTTGAATGGTTTTCCTTATTCAATTAGAGCATCACTATGTTGTGAATATAAACCAGGGTTGTTGTCTGATATAAGACAAGCACTCGATGCTCTTCATCTTATGATAACAAGGGCAGATATTGCAACCTTGGAAGGCAGGATGAAGAATGTCTTTGTGATCATTAGCTGCAAAGAACAGAACTTTGAAGATGCCGCATACCGTCAGTTTCTGGCCGTTTCTGTTCACCAAGCTCTTAAGTCTGTGCTCAATAGATTTTCTGTTTCAGAGGACATTTTAGGAACCAGGAAAAGAAGGAGGATTTCTATATTCAGTTCTTCATCTTTAGAAGATTTCTTGTAA 774 0.4173 MEMEDFLWGVAIDEDAPKWKSDGFEGSNVIGSGCGSSFSLVLDRERGELVEAPVKLERKGISTERSIEALRSHSEAERKRRARINTHLDTLRSAIPGALKMDKASLLGEVIRHLKELKKNAAQACEGLMIPKDNDEISVEEHEGGLNGFPYSIRASLCCEYKPGLLSDIRQALDALHLMITRADIATLEGRMKNVFVIISCKEQNFEDAAYRQFLAVSVHQALKSVLNRFSVSEDILGTRKRRRISIFSSSSLEDFL 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0932 257 CDD bHLH_AtAIG1_like 63 139 - -
Aed5g0932 257 SMART finulus 74 123 IPR011598 GO:0046983
Aed5g0932 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 121 IPR036638 GO:0046983
Aed5g0932 257 Gene3D - 64 125 IPR036638 GO:0046983
Aed5g0932 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 68 117 IPR011598 GO:0046983
Aed5g0932 257 PANTHER TRANSCRIPTION FACTOR BHLH30 3 256 IPR045847 GO:0003700|GO:0006355
Aed5g0932 257 CDD ACT_UUR-ACR-like 156 198 - -
Aed5g0932 257 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 3 256 - -
Aed5g0932 257 Pfam Helix-loop-helix DNA-binding domain 72 117 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0932 Aed-Chr5 7132147 7133593 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0932 55 246 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 39.796 6.16e-31 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed5g0932 HLH 7.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0932 - - gmx:100784966 440.654