Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0920 ATGGATTCCTTGAACGATGATCACGACCATGAGGAACCACTTGTTCGATACCACAACGAGGTGAACAGAACAATATTGTATGTCTCCATGGTTTCCTTCATGACGGTCTTGTTCCTCGTATTCGCCCTCTACCTCTACGCCAGATGCGTCCTCCGGGGCCGCACCCGCCACCGCGCCGCCATTCGCCGCCTCACCATCGCTGCGCTTCATGTTTCCGACCTCGACGCCACCACACACCGCCACGCCGAGCCACCCAACACGGGCCTTGAACCCGCCATCATCGCATCGCTGCCAACCTTCAACGTCAAGGCGAAGGCAAAGGATGGCAGCGGCGGCAGTGATGGCGGTGACACCATCTCTGCAGTGGAGTGTGCGGTGTGCTTGAGTTCTCTGGATAGTGGAGAAAAGGCCAAGTTGCTTCCCAACTGCAATCACTTTTTTCACGTGGACTGCATTGACACGTGGCTGGGTTCTCACTCTACGTGTCCTCTCTGTCGAGCCGGGGTTAAGCCTCGGCTTGCACCACAGGATCGCGAGGGTCCTATGAGTCTTTCTCTTAATGGTGCATCTGCACTACTCAATGCAAGTATAGAGAATAGTTGCAAAGACAACAACAAAGACAACGGTGAGTCATCGAAAATTAATGATTCTAATTCTAGTTCACGGTTTAGAAGGATTCTCACTAGGGAAAGATCTTCAAGAAGAATCCAACCCTCTGGCCATGATGATGAGGATGGTGGTGTTGATCAAGATTTGGAGAGACAATGA 768 0.5208 MDSLNDDHDHEEPLVRYHNEVNRTILYVSMVSFMTVLFLVFALYLYARCVLRGRTRHRAAIRRLTIAALHVSDLDATTHRHAEPPNTGLEPAIIASLPTFNVKAKAKDGSGGSDGGDTISAVECAVCLSSLDSGEKAKLLPNCNHFFHVDCIDTWLGSHSTCPLCRAGVKPRLAPQDREGPMSLSLNGASALLNASIENSCKDNNKDNGESSKINDSNSSSRFRRILTRERSSRRIQPSGHDDEDGGVDQDLERQ 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0920 255 MobiDBLite consensus disorder prediction 200 255 - -
Aed5g0920 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 172 IPR013083 -
Aed5g0920 255 PANTHER RING FINGER DOMAIN-CONTAINING 6 255 - -
Aed5g0920 255 MobiDBLite consensus disorder prediction 223 255 - -
Aed5g0920 255 SMART ring_2 124 165 IPR001841 -
Aed5g0920 255 Pfam Ring finger domain 123 166 IPR001841 -
Aed5g0920 255 CDD RING-H2_PA-TM-RING 123 166 - -
Aed5g0920 255 PANTHER RING-H2 FINGER PROTEIN ATL40-LIKE 6 255 - -
Aed5g0920 255 SUPERFAMILY RING/U-box 123 173 - -
Aed5g0920 255 ProSiteProfiles Zinc finger RING-type profile. 124 166 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0920 Aed-Chr5 7010173 7010940 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0920 4 255 C3H Transcription Factor Family AT2G42360 41.085 2.20e-49 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0920 K19038 - gmx:100811308 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0920 5 7010173 7010940 Aed5g0920 5 7010173 7010940 ECH