Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0896 ATGCTAAGAAAGATGGATGAAGGAGAAATCATCATCACAAATGCTTTCCCTCAGAATCTAACTGCTTCTTCTGCTGCATCTAGTAATAATAACAACAACAACCCACCTCCTGCTTTGAAGAGGAAAAGAAACCTCCCAGGAAATCCAGGCATGCTTGTTTCTTTCACTATGTTTTTTTTTTTTTTTTTATTGATAAATGTTAATCCTGAAGCAGAAGTGATAGCCCTATCACCAAAGACACTGATGGCAACAAACAGATTCTTGTGTGATACATGTGGGAAGGGTTTCCAAAGGGACCAAAATCTCCAACTCCATCGACGTGGACACAACCTTCCATGGAAGCTGAAGCAGAGGACGGGGAATGAAGCAAAGAAGAGGGTTTATGTGTGCCCTGAGAAGAGCTGTGTCCACCACGACCCTTCAAGGGCTCTTGGAGACTTAACTGGGATCAAGAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGCGAGAAGTGCTCTAAGCGCTATGCTGTGCAGTCGGATTGGAAAGCTCACTCCAAAACCTGTGGCACCAGGGAATACAAATGTGACTGTGGAACTATCTTTTCAAGGAGAGACAGCTTCATAACTCACAGGGCCTTCTGTGATGCATTGGCAGAAGAAACAGCTAGGGTAAATGCAGTAACAGACATGAACACCTCCTTAGGGGGCAACAACATTGGTTACAACATGATTGGAACATCCCTAGTCCATAACAACAACAACATGGCAACCCCTACTTTTCCCTCACTTTTCAAGCCAGTTTCAAGCACTGCTACTGATGAATTAACAAGTAACCAAACCTCTAGGGGAATATCACTACCCCTTTGGATGAATCAAACAATATCTTCTCATCAGGCTCAAGAAACAATATTGGTCAACCCCAATTTTTGTGACACAAGCTCTTCATCAGCAACAATGTATGGTAGCAATAACTCAATTCTCCAATGCTCAAATATTCTTCCACCTTCTTCTAATAACAACAACTATCAGCTAAGTTGGGTGTTTGGAACTAAGCTTTCCAATAGTAGTAACAACCAAGAGATGATGATAACAACAACTAGCACACCAAACAACACAAGTGTTCCTTCTTTGTATAGTTCCCAACACCAACACCAAACATGTTCATCATCATCAGCAAACATGTCAGCAACAGCTTTGTTGCAAAAAGCTGTTCAGATTGGAGCAACAAGTTCAAGTGACCCTTCATGGCTTGGAAGCTTAGGTTTGAAATGTGGCAACAACAGTAGCCAAGGTCAAGATGGGAATAATAACAATAACAAGTATAGTGGCATCATGTACGGTTCATCGAGTAATTTGGTGCTCAATGAAGATAACAACTCTGCATGTGAATTGTCACAAATGCACCCTCACAAACGTAGACACGTGTTCAATGAAGAAAGTGGAGGGGGGCAAACTAGGGATTTTCTTGGGGTTGGTATGCAAAACCATTTGCCACACTTCATCAATCAAGGGGTGGACTTGATTTGA 1518 0.4216 MLRKMDEGEIIITNAFPQNLTASSAASSNNNNNNPPPALKRKRNLPGNPGMLVSFTMFFFFFLLINVNPEAEVIALSPKTLMATNRFLCDTCGKGFQRDQNLQLHRRGHNLPWKLKQRTGNEAKKRVYVCPEKSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAVTDMNTSLGGNNIGYNMIGTSLVHNNNNMATPTFPSLFKPVSSTATDELTSNQTSRGISLPLWMNQTISSHQAQETILVNPNFCDTSSSSATMYGSNNSILQCSNILPPSSNNNNYQLSWVFGTKLSNSSNNQEMMITTTSTPNNTSVPSLYSSQHQHQTCSSSSANMSATALLQKAVQIGATSSSDPSWLGSLGLKCGNNSSQGQDGNNNNNKYSGIMYGSSSNLVLNEDNNSACELSQMHPHKRRHVFNEESGGGQTRDFLGVGMQNHLPHFINQGVDLI 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0896 505 MobiDBLite consensus disorder prediction 22 38 - -
Aed5g0896 505 Gene3D Classic Zinc Finger 83 110 - -
Aed5g0896 505 MobiDBLite consensus disorder prediction 22 43 - -
Aed5g0896 505 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 63 504 - -
Aed5g0896 505 Gene3D Classic Zinc Finger 120 211 - -
Aed5g0896 505 PANTHER F-BOX ASSOCIATED PROTEIN 63 504 - -
Aed5g0896 505 SUPERFAMILY beta-beta-alpha zinc fingers 86 183 IPR036236 -
Aed5g0896 505 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Aed5g0896 505 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 109 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0896 Aed-Chr5 6816638 6819360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0896 36 491 IDZ Gene Family AT1G03840 45.809 7.64e-129 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed5g0896 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0896 K25870 - gmx:100790620 674.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0896 5 6816638 6819360 Aed5g0896 5 6816638 6819360 ECH