Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0888 ATGCTTGCGGTGTCACCTTTGAGGAACATCAAAGATGAAAAGAACCAAAGAGAGATATCGATGGAGGGTTTCTCAATGGCAACAACAACAACAACCGATGATGATGTTGATTTTTGTGACCTTTCTGAAGGGAACTTGTTGGAGAGCATCAACTTTGACGACCTCTTTGTCGGCATCGACGTTGACGGAGATGTCTTGCCGGACCTCGAGATGTTCGGTGAGTTCTCCGTCAGTGTCAGTGCCGGCGAGGAATCTTCGGAGCTGAATTCGCCGACAACGGAGAATGTTATCACCAATATTTCTTCAAAGAAAGAAGAGGAAGATAAAACTTCTTGCAATGCTTCGGGTCAAGACATGGGGTCAAACCGAGGAGAAGAGATAGTGAGCAAGAGAGATGAATCATCAGTGGTGGTGAATCCAGCACCAAAGGATGGTGGAAAAGGAAGAAAATCTTCATCGGCTCAATCAAAGAACAATAGTAGCAGTAATCATCCTCATGGGAAGAGAAAAGTCAAGGTGGATTGGACCCCAGAATTGCACAGACGATTCGTGCAAGCTGTGGAACAGCTAGGAGTTGATAAGGCTGTGCCTTCAAGGATTTTGGAGATTATGGGAATCGATTGTCTCACTCGCCATAACATTGCAAGCCACCTTCAAAAATATAGATCCCATAGGAAACATTTGCTAGCTCGTGAAGCTGAAGCAGCAAGCTGGAGTCAAAGGAGGCAAATGTATGGTGGTGGAGGGAAGAGAGAGGGGAGTAGTACTAGTCCATGGATAGCACCAACCATGGGTTTCCCTCCAACAATGAATCCAATGCACCATTTTAGACCTCTTCATGTATGGGGGCACCCTTCTATTTCTATGGACCAGTCCTTCATGCACATGTGGCCTAAACATGTTCCAACACCACCACCACTCTCATGGCCGCCACTGGCTGCACCACCACCTCAAGATCCTTCATTTTGGCACCAACAGGTTCCTCCTAACGCACTAATCCCAGGAGGAGGAACAGCTTGTTTTCCACAACCTCTGACACCAACGACGAGATTTGGAATTCCACCACATGCCATGTACAAAGCAGATCACGGCATTGGCGTCCCTGGTCCCCGTCCCCTATTCGACTTTCATCCGTCAAAGGAGTGCATAGATGCAGCTATTGGAGATGTTTTATCAAAGCCTTGGCTGCCACTACCTATTGGACTTAAGGCTCCAGTGATTGATAGTGTGATGAGTGAATTACAAAGACAAGGAATTCCAAACGTTCCACCCTCTAGTGCTTGA 1284 0.4688 MLAVSPLRNIKDEKNQREISMEGFSMATTTTTDDDVDFCDLSEGNLLESINFDDLFVGIDVDGDVLPDLEMFGEFSVSVSAGEESSELNSPTTENVITNISSKKEEEDKTSCNASGQDMGSNRGEEIVSKRDESSVVVNPAPKDGGKGRKSSSAQSKNNSSSNHPHGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWSQRRQMYGGGGKREGSSTSPWIAPTMGFPPTMNPMHHFRPLHVWGHPSISMDQSFMHMWPKHVPTPPPLSWPPLAAPPPQDPSFWHQQVPPNALIPGGGTACFPQPLTPTTRFGIPPHAMYKADHGIGVPGPRPLFDFHPSKECIDAAIGDVLSKPWLPLPIGLKAPVIDSVMSELQRQGIPNVPPSSA 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0888 427 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 427 - -
Aed5g0888 427 MobiDBLite consensus disorder prediction 81 174 - -
Aed5g0888 427 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 170 224 IPR006447 GO:0003677
Aed5g0888 427 MobiDBLite consensus disorder prediction 81 99 - -
Aed5g0888 427 Gene3D - 167 228 - -
Aed5g0888 427 Pfam Myb-like DNA-binding domain 173 222 IPR001005 -
Aed5g0888 427 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 167 226 IPR017930 -
Aed5g0888 427 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 427 IPR044825 GO:0003700|GO:0045893
Aed5g0888 427 SUPERFAMILY Homeodomain-like 168 227 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0888 Aed-Chr5 6736741 6741697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0888 1 326 G2-like Transcription Factor Family AT5G44190 41.667 5.55e-66 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aed5g0888 Myb_DNA-binding 5.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0888 - - gmx:100799248 641.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0888 5 6736741 6741697 Aed5g0888 5 6736741 6741697 ECH
Aed5g0888 5 6736741 6741697 Aed1g0790 1 8800767 8804793 PCT