Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0879 ATGAGTGGTATTTGTGGAGAACCCAATTTCCAACTTCAACCCTCTCACAAACTTCTCTCCCTCAAGAAATCCCTTAGGGACATTGACATCCCAGTTCCACCAAGGAAGCTCTTCACCCACCGCTCCGCCTCTGTTCACGGAGGCTCTGGCGATATGTTCTCTGATGACGACTCCGACTCCGACCCGTACGCCTCGGACCAGTTCCGCATGTTCGAGTTCAAGGTCCGGCGGTGTACTCGCAGCCGGAGCCATGATTGGACAGACTGTCCCTTTGCTCACCCAGGCGAAAAGGCACGCCGTCGCGACCCTCGCCGGATACAGTATTCCGGGACAGTCTGTCCAGAGTTTCGCCGCGGCCAGTGCGGCCGTGGCGATGCATGTGAGTTCTCTCACGGGGTGTTCGAGTGCTGGCTGCACCCTTCTAGGTTTAAGTACAAGGATGTTTTCTCTGAGCTTATGTGTTCCATGGAGGGTTTGAATTTTGGTGAGGCTTCTTCACTTTTGGCTGCTTCTTCTAAGCCTCACAATCAGAAGGATGTTTTCTCTGAGCTTATGTGTTCCATGGAGGGTTTGAATTTTGGTGAGGCTTCTTCACTTTTGGCTGCTTCTTCTAAGCCCCACAATCAAAAACAGTTCATTAACAATATTCTTTCATCAACCATCACTACAAATGCTTGTGGAAGCTTTTCCAATAATGGGAATGGAAGAATTTTTAGGGAAGAAAGTGGGGTTGTAATTGATGATGTCATTTCCCCAGATCTAGCGTGGGTGAATGAATTGCTGATGTAA 789 0.493 MSGICGEPNFQLQPSHKLLSLKKSLRDIDIPVPPRKLFTHRSASVHGGSGDMFSDDDSDSDPYASDQFRMFEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRIQYSGTVCPEFRRGQCGRGDACEFSHGVFECWLHPSRFKYKDVFSELMCSMEGLNFGEASSLLAASSKPHNQKDVFSELMCSMEGLNFGEASSLLAASSKPHNQKQFINNILSSTITTNACGSFSNNGNGRIFREESGVVIDDVISPDLAWVNELLM 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0879 262 SUPERFAMILY CCCH zinc finger 106 136 IPR036855 GO:0046872
Aed5g0879 262 PANTHER UNKEMPT FAMILY MEMBER 53 145 IPR045234 -
Aed5g0879 262 ProSiteProfiles Zinc finger C3H1-type profile. 107 134 IPR000571 GO:0046872
Aed5g0879 262 Coils Coil 257 262 - -
Aed5g0879 262 SMART c3hfinal6 107 133 IPR000571 GO:0046872
Aed5g0879 262 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 112 132 IPR000571 GO:0046872
Aed5g0879 262 Gene3D - 71 136 - -
Aed5g0879 262 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 53 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0879 Aed-Chr5 6671868 6672935 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0879 59 181 C2H2 Transcription Factor Family AT5G07500 48.780 2.29e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed5g0879 zf-CCCH 5.3e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0879 K23047 - gmx:100800123 227.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0879 5 6671868 6672935 Aed5g0879 5 6671868 6672935 ECH