Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0878 ATGACTGGCAAAGACATCCTCCATTTGATGAAGGTGAAAGCATTTGGAACATCAACACCGGACACAGGGAAAGGAAAAGGCAAAATATCAAAACACATTACACATGGCTTTCACTTGATGAAGGGCAAATCAGCGCATCCTATGGAGGATTATTTAGTTTCAGAATTCAAGCAAGACAAGGACAGAGAATTAGGCTTGTTTGCAATCTTTGATGGCCACTTAGGCCATGATGTTGCAAGCTATTTGCAGAACCACCTTTTCCAAAACATCTTGAAACAGAATGACTTTTGGACTGAGACAGAAGTTGCAGTGAAGAGAGCTTACCTTGAAACAGATGAGAAAATATTGGAAAAAGCACTCGTGTTGGGACGAGGAGGGTCAACAGCAGTGACTGCAATACTTATTGATGGTCAGAAGCTTGTGGTAGCAAATGTTGGTGACTCAAGAGCTGTCATTTGTGAGAATGGAAAGGCAAGACAACTATCTGTGGATCATGAACCAAGCAAGGAAAAAAAATCTATCGAGAGGCGTGGCGGCTTTGTATCAAACATTCCAGGAGATGTCCCACGAGTAGATGGACAATTGGCAGTAGCAAGGGCTTTTGGTGACAGGAGCCTGAAGATGCATCTTAGCTCAGAACCAGATGTGTTAGTAGTGGAAGTAGATCAACAACATACTGAGTTTCTTATTCTGGCTAGTGATGGAATATGGAAGGTTATGTCAAATGAAGAAGCAGTGGAATCTATTAGACAAATAAAGGATGCTCAAGCTGCAGCAAAACACTTAATAGAAGAAGCAGTTTCAAGGAAAAGTAAGGATGACATATCTTGCATAGTTGTGAGGTTCCGATGA 852 0.4155 MTGKDILHLMKVKAFGTSTPDTGKGKGKISKHITHGFHLMKGKSAHPMEDYLVSEFKQDKDRELGLFAIFDGHLGHDVASYLQNHLFQNILKQNDFWTETEVAVKRAYLETDEKILEKALVLGRGGSTAVTAILIDGQKLVVANVGDSRAVICENGKARQLSVDHEPSKEKKSIERRGGFVSNIPGDVPRVDGQLAVARAFGDRSLKMHLSSEPDVLVVEVDQQHTEFLILASDGIWKVMSNEEAVESIRQIKDAQAAAKHLIEEAVSRKSKDDISCIVVRFR 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0878 283 SUPERFAMILY PP2C-like 31 282 IPR036457 -
Aed5g0878 283 SMART PP2C_SIG_2 39 282 IPR001932 -
Aed5g0878 283 CDD PP2Cc 35 282 IPR001932 -
Aed5g0878 283 Pfam Protein phosphatase 2C 45 275 IPR001932 -
Aed5g0878 283 SMART PP2C_4 23 280 IPR001932 -
Aed5g0878 283 PANTHER PROTEIN PHOSPHATASE 2C 39-RELATED 1 282 - -
Aed5g0878 283 ProSiteProfiles PPM-type phosphatase domain profile. 34 282 IPR001932 -
Aed5g0878 283 Gene3D - 29 283 IPR036457 -
Aed5g0878 283 PANTHER PROTEIN PHOSPHATASE 2C 1 282 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0878 Aed-Chr5 6665364 6668439 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0878 23 282 PP2C-type Phosphatase Gene Family AT4G28400 74.615 1.35e-143 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0878 K17506 - gmx:100819846 512.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0878 5 6665364 6668439 Aed5g0878 5 6665364 6668439 ECH