Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0876 ATGCCTGCTCAGAAGCGTTCCTTCCCCGACTCTCCTCACGATCACCACCGTCACCCCAAACACCACCACGAAGAAGAACCAAGAACAGAAGAAGAAGAAGAACAACAACGCGAAGAAGAAGAAGAAGAAGATGATGATAATAATAACAAATCCGATGATTCTCTCCACGCCGCGTCCTCTCCCTCCGACGACAAATCCGAGTATGTGTTTGTAGAACTTCTGGAAATACGCAAAGAAGTTCAATGTCCAATTTGCCTTGGTATTATTAAGAAAACACGAACTGTCATGGAATGCTTGCACCGATTTTGCAGGGAATGCATTGACAAGTCGATGCGACTAGGGAACAATGAATGCCCTGCTTGTCGCACGCACTGTGCCAGTCGTCGTTCTTTGAGAGATGATCCAAACTATGATGCCTTAATTGCAGCTTTATATCCGGATATTGAGAAGTACGAGGAAGAGGAGCTTGAATTCCGTGAGGAAGACAAGAACCGCAATAAGCAGATTCAGGCTTCAATTGCAAAAGTTGTTCAACGACAATCTGAAGCACTGGTTAAGAGACGTAGAGATACACCAGGTTCATTTGTGACAAGATCACAGCGCAATCAACGGAATGTTCTCACTAGGAGACAAAACCAAGTGATAGATAATCAAGGATCTGAAGATAACGAGGAGGAAAATGACAATAATGAAAAAGACTCATCTTCTGCGGATGAGCGATGTACAGAAATCAGGCAGAGAAGGCGTAAGAGGCGGACCAGAGGTCGCCCTGCTCAGCCCTCATCATCAACAGCAAGTCCTGATGGTGGATGCATTGAAAGTGACTTGGATATAAGTCGAGAAAATCGAGGAATTTCTTCTAGACCGTCAAAACCTCAAAAGCTAACTTGGGGAAGGGGTGGTTTTAGGAGTCACACACGGCATGGAAGTGGCAATGGTAGCAATAGCAAAAGTTCCCGCAGTAGTCGCGTGGCTAAGTTAGTTGATTATCTCCGTAGCTTGAAGGAAAACACTGATGAGTTAGATGTCCATCTCATTCTTTTGTCTTTAGACAAACAAAGTACACCAAGCTTGCAGCAGCCACACCTTTGTTGTCGGCCAACATTGTCTGTGAAGCACCTTTGTGAATATGTTTCTGGTCAGACACCTTTGCCAGTTGAAGAAGTTGAGATATTGGCAGTTAAAGGATGCTTCAGTACAGTGTGTGACAAGTCGTCATTTGATGAAACTTCATCCTCTGTGGAGGAGCTAACTACCCTGGTTATTGATCCTAGCAAAGATGATCTGGAAACTTTGCAAGGGCATGAATCTTTGGCAGGGATTAAATCCAAATGCATATCTAAAAGGGAGCATTTGATTCTGGCATACAGGCGGAAGGAATGA 1383 0.4432 MPAQKRSFPDSPHDHHRHPKHHHEEEPRTEEEEEQQREEEEEEDDDNNNKSDDSLHAASSPSDDKSEYVFVELLEIRKEVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEEEELEFREEDKNRNKQIQASIAKVVQRQSEALVKRRRDTPGSFVTRSQRNQRNVLTRRQNQVIDNQGSEDNEEENDNNEKDSSSADERCTEIRQRRRKRRTRGRPAQPSSSTASPDGGCIESDLDISRENRGISSRPSKPQKLTWGRGGFRSHTRHGSGNGSNSKSSRSSRVAKLVDYLRSLKENTDELDVHLILLSLDKQSTPSLQQPHLCCRPTLSVKHLCEYVSGQTPLPVEEVEILAVKGCFSTVCDKSSFDETSSSVEELTTLVIDPSKDDLETLQGHESLAGIKSKCISKREHLILAYRRKE 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0876 460 Coils Coil 28 50 - -
Aed5g0876 460 CDD RING-HC_RING1_like 82 122 - -
Aed5g0876 460 MobiDBLite consensus disorder prediction 307 322 - -
Aed5g0876 460 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 14 460 - -
Aed5g0876 460 ProSiteProfiles Zinc finger RING-type profile. 82 122 IPR001841 -
Aed5g0876 460 PANTHER OS11G0578200 PROTEIN 14 460 IPR044592 -
Aed5g0876 460 Pfam Zinc finger, C3HC4 type (RING finger) 81 121 - -
Aed5g0876 460 MobiDBLite consensus disorder prediction 8 30 - -
Aed5g0876 460 MobiDBLite consensus disorder prediction 180 322 - -
Aed5g0876 460 SUPERFAMILY RING/U-box 69 136 - -
Aed5g0876 460 MobiDBLite consensus disorder prediction 195 218 - -
Aed5g0876 460 MobiDBLite consensus disorder prediction 1 64 - -
Aed5g0876 460 ProSitePatterns Zinc finger RING-type signature. 98 107 IPR017907 -
Aed5g0876 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 152 IPR013083 -
Aed5g0876 460 SMART ring_2 82 121 IPR001841 -
Aed5g0876 460 MobiDBLite consensus disorder prediction 31 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0876 Aed-Chr5 6642327 6649648 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0876 75 145 C3H Transcription Factor Family AT3G23060 35.135 5.43e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0876 K10695 - gmx:100819311 678.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0876 5 6642327 6649648 Aed5g0876 5 6642327 6649648 ECH