Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0873 ATGGCTTCTTCTGCTTATTCCTTTACCATTAGTGTGCTATTCCTCATTTTTGTGCACTTGTCATCTTTCATAAACAACCTTAATGCAAAACATACCAATAATACCAACAATCACAACCACCAACACACTCAAAATTTACCCTCAAACCCAAGGCTTCACATGGCTTTGCTTGGGCTCCAAGCATGGAAGCAAGTGATATACTCAGACCCAAATAACTTCACTTCCAACTGGGTAGGTCCTTCAGTTTGCAACTACACAGGTGTATACTGTGCTCCCTCACTTGATGACCCTGAAGTGAAAGTTGTGGCTGGCATTGACCTTAACTTTGGAGACATAGCAGGGTTCATACCCAATGAAATAGCCCTTCTCTCTGACCTTGCAGTGCTTCATCTCAGCAACAACCGTTTCTGTGGCATCCTCCCAATGTCATTCACCAACCTCACTCTACTCTATGAGCTTGACCTTAGCAACAACAGATTTGTAGGACCCTTCCCTTTGGTTGTGCTCTCCCTTCCTATCCTCAAATACCTCGACCTCCGCTACAACGAGTTCGAAGGGCCGTTGCCTCCTCAACTCTTCAACAACACAATTGATGCCATCTTTGTCAACAACAACCGCTTCACCAATACTATCCCTCCAAACTTTGGCAAAATCTCAGCTTCTGTCTTCGTCTTTGCCAACAACAAATTTGGAGGGTGTCTCCCAGAAAGCATAGTGAACTTTGCTGACACTTTGGAGGAGCTTGTGCTAATCAACACAAGCTTGTCAGGGTGCTTGCCACAGCAAGTAGGGTCTCTCTACAAACTAAGAGTGTTGGATGTGAGTTTCAATAGCATTGTTGGCCCTATACCTTATAGCCTTGCAGGGTTGTCTCACTTGGAGCAACTGAACTTGGAGCATAACATGATGAGTGGAACAGTCCCTAGTGGGGTTTGTGAGTTGCCAAACTTGGCAAACTTCACTTTCTCTTACAACTTCTTCTGTGAGGAAGAGGGTATTTGTCAGAACTTGACATCATCATCATCAAAGAGAATAGTGTTTGATGATAGAAGAAACTGTTTGCCAGGGAAGCCACTTCAGAGGAGTGAAAAGGAATGCAAGGCCAAAAATGAACACCCTGTTGATTGCTCTGAGCTTTGCTGTGTTGTTGGGAGTAATAATGTCTCTGCTGTGCCACCTCTTCTTGCAGCAATGCCTGTGTCTGCACCTCTTCTTGCACCAAGCCACACTTAA 1233 0.4469 MASSAYSFTISVLFLIFVHLSSFINNLNAKHTNNTNNHNHQHTQNLPSNPRLHMALLGLQAWKQVIYSDPNNFTSNWVGPSVCNYTGVYCAPSLDDPEVKVVAGIDLNFGDIAGFIPNEIALLSDLAVLHLSNNRFCGILPMSFTNLTLLYELDLSNNRFVGPFPLVVLSLPILKYLDLRYNEFEGPLPPQLFNNTIDAIFVNNNRFTNTIPPNFGKISASVFVFANNKFGGCLPESIVNFADTLEELVLINTSLSGCLPQQVGSLYKLRVLDVSFNSIVGPIPYSLAGLSHLEQLNLEHNMMSGTVPSGVCELPNLANFTFSYNFFCEEEGICQNLTSSSSKRIVFDDRRNCLPGKPLQRSEKECKAKNEHPVDCSELCCVVGSNNVSAVPPLLAAMPVSAPLLAPSHT 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0873 410 Gene3D Ribonuclease Inhibitor 55 221 IPR032675 -
Aed5g0873 410 PANTHER EXTENSIN-LIKE PROTEIN 2 409 - -
Aed5g0873 410 Pfam Leucine rich repeat 244 302 IPR001611 GO:0005515
Aed5g0873 410 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 2 409 - -
Aed5g0873 410 SMART LRR_typ_2 266 289 IPR003591 -
Aed5g0873 410 SMART LRR_typ_2 171 195 IPR003591 -
Aed5g0873 410 SMART LRR_typ_2 123 146 IPR003591 -
Aed5g0873 410 SMART LRR_typ_2 290 314 IPR003591 -
Aed5g0873 410 Gene3D Ribonuclease Inhibitor 222 379 IPR032675 -
Aed5g0873 410 SUPERFAMILY L domain-like 60 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0873 Aed-Chr5 6626637 6627869 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0873 48 381 Leucine-rich Repeat extension Gene Families AT3G24480 54.030 3.37e-132 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0873 - - gmx:100802803 713.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0873 5 6626637 6627869 Aed5g0873 5 6626637 6627869 ECH