Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0872 ATGGTGTCTTGGGGGGTTGACATGGTTGAGGTTGACTCTCAAAGATTGCAGCTTCAGAAGAGGGAAGTGGGGATTTTGCTCAGAATTTCATGTGGTTGGTTGGTGTTGTTTCTGTTGTTTTTCAGTCCAGTGGCGGGTTTGAGACCCTTGAGGGATAGAACTAATTCATGGGGTGATGAGTGGGTTTTTACAAGAAAAGATGAAAGTGACTTAGGTCCATTTTCACAATGGAACATAAGTGGAACTTACAGAGGGAATTGGAGGTTTTTAGATACTACAAATGGCTCTACCAGATTTCCAGACATCAGAAAAATAAATGGAAATTCTGTAATTGAATTAGTTAGTATGCCCACAAAGATAACTGGTGTACATTACGTGCAGGGGGTAGTCATATTCCATGATGTATTTGACAATGAATACAATGTTGGTGGTGCTCAAATCAGACTAGAAGGTGTATATATATGGCCTTATAGGCAGCTTCGAATGGTAGCCAACAGTGGAAAAGAGGGGGGATTAAATCAGGATGGAGATTATATTTTATCCAATCCATATCATCTGCTTGGAGTTTTCTCATCTCAAGTATTCCAAGATTCTTCACGACAAAAGATGTGGAGAAGAAAGCATTCTTCATTACATGGCATGGAGAAACATTGCAATGTAGAAATCGCTGCACAGGTTTCACGCCTGTCATCATCAAAACATGAAGGGGAGAGTGATTCTTTTCAGCTAGAAGGGTTAATGGAGAGTCCGTCTGTGGATGACGATGGGGACTGCTTCTCGCCTTTACAGTTAAATGCAACATCTATTAACATTGAAGTCTACTATAATAAAGCAGTGAACTATACCTTGATGGTTACTTTTATCTCATTTTTGCAAGTTCTTCTATTAATTCGGCAAATGGAGCATAGCAACACCCAATCTGGGGCTGCTAAGGTTTCAATATTAATGATTGGTCAGCAAGCTATAGTAGATGCTTATCTTTGCCTTATACATTTGACTGCAGGAATACTAGTTGAATCCTTGTTCAATGCTTTTGCAACTGCTGCATTTTTCAAGTTTGTGGTTTTCTCAATATTTGAGATGAGATATCTCCTTGCCATCTGGAAGGCAAGTAGGCCTTTGAGCAATGGTGAAGGTTGGGAGACAATGAGGCGTGAATTGTCAGTTTTATACAGCCGTTTCTATGGGATCCTATTGGGAGGCATACTGCTCATGTATGAATTCCATAATCATTTGAGACCTATTCTTCTTCTTGTATACTCCTTTTGGATACCTCAGATAATCACCAATGTTATCCGTGACTCACGCAAGCCTTTGCATCCTCATTATATCTTAGGCATAACTATTACACGGCTAGCAGTCCCATTATATATTTTTGGTTGTCCTAACAACTTCTTGCGCATAGAACCAGATCAGAGCTGGTGTGTTTGTTTGGCTATATTTGTTGGACTTCAAGCTGCGATTCTCTTGCTTCAGCACTATTTTGGGTCCTTGTGGTTCATTCCTCGTCAGGTGACCCCTTGTGATCATTTTTTCCACTCTGGGTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGCCCTACTTGCCGGCGCCCTCTTCCACCTGCATGA 1614 0.4077 MVSWGVDMVEVDSQRLQLQKREVGILLRISCGWLVLFLLFFSPVAGLRPLRDRTNSWGDEWVFTRKDESDLGPFSQWNISGTYRGNWRFLDTTNGSTRFPDIRKINGNSVIELVSMPTKITGVHYVQGVVIFHDVFDNEYNVGGAQIRLEGVYIWPYRQLRMVANSGKEGGLNQDGDYILSNPYHLLGVFSSQVFQDSSRQKMWRRKHSSLHGMEKHCNVEIAAQVSRLSSSKHEGESDSFQLEGLMESPSVDDDGDCFSPLQLNATSINIEVYYNKAVNYTLMVTFISFLQVLLLIRQMEHSNTQSGAAKVSILMIGQQAIVDAYLCLIHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPLSNGEGWETMRRELSVLYSRFYGILLGGILLMYEFHNHLRPILLLVYSFWIPQIITNVIRDSRKPLHPHYILGITITRLAVPLYIFGCPNNFLRIEPDQSWCVCLAIFVGLQAAILLLQHYFGSLWFIPRQVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPPA 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0872 537 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 469 534 IPR013083 -
Aed5g0872 537 ProSiteProfiles Zinc finger RING-type profile. 476 531 IPR001841 -
Aed5g0872 537 PANTHER TRANSMEMBRANE E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 505 537 - -
Aed5g0872 537 PANTHER RING ZINC FINGER PROTEIN 16 507 - -
Aed5g0872 537 SUPERFAMILY RING/U-box 503 536 - -
Aed5g0872 537 PANTHER RING ZINC FINGER PROTEIN 505 537 - -
Aed5g0872 537 PANTHER TRANSMEMBRANE E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 16 507 - -
Aed5g0872 537 Pfam Ring finger domain 505 531 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0872 Aed-Chr5 6616369 6625716 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0872 502 534 C3H Transcription Factor Family AT4G12190 48.571 3.19e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0872 K23788 - gmx:100802452 1007.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0872 5 6616369 6625716 Aed5g0872 5 6616369 6625716 ECH