Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0870 ATGTCACTGCAGGCTCTGAAGGAATCTCTGCGATCTTGCTCAAACCAAAAACCCTCTTCAAGCTCTTCCTCTTCTTCAATTACCCAAACACGGCCCAATTCAATTCTCCTCGAAAGTGATTCCCTTTTTCCACTTCATAGAAAACCTCCTAAATCCTCTCTTGCTCACCAGCTTCGCCGCCTTGAAGACTCACTAACCCAAACGCACCCCAAAACCCTTCAACAACAACAACAACAACAACAAGAAAAAGAAAAGGAAACAGAAGAAGAAGAAGAAGATGAAGAAGAAGAACCTGAGATAAAGAGAGCGAAATTCGCTTCACCAAAATTGCCACACTTTCAATTTGAACCTACTGGACCCTTTGAGCCTCTTCTCTTGTCTTCACATGGAGAATTTCCTGTGGTTCAGGTTCCGGCATCTATAAACTGTAGACTGCTTGAGCATCAAAGAGAGGGAGTGAGATTTTTGTATGGTTTGTACAAGAACAATCATGGAGGTATACTTGGAGATGACATGGGTCTTGGAAAGACCATTCAAGCAATAGCATTTCTTGCTGCTGTCTTTGGTAAAGAAGGACATTCTACTCTAAATGAAAACCAGGTAGAGAAAAGAGATCCTGCATTAATAATTGGCCCAACTTCTGTTATCCACAACTGGGAGAGTGAATTCTCCAAGTGGTCTAACTTCAGTGTTTCCATTTATCATGGTGCAAACCGGGACCTGATATATGATAAATTGGAAGCAAATGGAGTGGAGATACTCATTACCAGTTTTGACACATACCGGATTCATGGAAGTTCCTTGTTAGATTTCAACTGGAACATTGTGATTGTCGATGAGGCTCATCGACTTAAGAATGAGAAATCAAAACTCTATAAAGCATGTTTAGAAATGAAAACCCTAAGACGCTATGGTCTCACTGGGACTGCAATGCAAAATAAGATCATGGAATTGTTCAATCTCTTTGATTGGGTTGCACCTGGATCCCTTGGAACACGGGAACACTTTCGTGAGTTCTATGATGAACCCCTTAAGCATGGCCAGAGGTCAACTGCTCCTGATAGGTTTGTCCAAATTGCTAATAAGAGAAAACAACATCTAGTGGCAGTTCTTCATAAATATATGTTGAGAAGAACAAAGGAAGAGACTATTGGGCATCTTATGATGGGTAAGGAAGATAACATCGTGTGTTGTGCAATGAGTGATGTGCAAAAACGTGTTTACAAGAGAATGTTACAGCTTCCTGACATTCAATGCCTTATAAATAAGAGCCGGCCTTGTAGTTGTGGTAGCCCTCTCACTCAAGTTGAATGTTGCAAGAGGATAGTACCAGATGGAGTTATTTGGCCTTACATGCATAGAGATAACCCTGATGGTTGTGATTCATGCCCTTTTTGCCTTGTTCTTCCATGCCTTGTCAAGCTCCAACAGATAAGCAACCACCTTGAGCTGATTAAGCCAAATCCCAAAGATGACCCTGACAAACAAAGTAAAGATGCAGAGTTTGCTGCTGCTGTCTTTGGCCCTGATATTGATTTAGTGGGTGGGAACACACAAAATGAAAGTTTCATGGGTCTCAGTGATGTGAAACATTGTGGCAAAATGCAAGCACTTGAAAAACTATTGTTCTCATGGTTTTCACAGGGTGACAAAGTTCTTTTGTTTAGCTATTCTGTAAGGATGCTGGACATACTGGAGAAATTTCTCATACGAAAAGGCTACTGCTTCTCAAGACTTGATGGGTCCACTCCAACTAATTTACGTCAATCTCTGGTTGATGATTTCAACTCAAGTCCAAGCAAACAAGTATTCCTGATATCAACTCGTGCTGGTGGGCTTGGATTGAACCTTGTCAGTGCAAACCGTGTTGTAATATTTGATCCCAACTGGAACCCTGCACAAGACTTACAGGCTCAGGACAGGTCCTTTCGTTTTGGACAGAAGCGGCATGTCGTAGTGTTCCGTCTTCTTGCAGCTGGTTCACTTGAAGAACTTGTTTACTCTCGTCAGGTGTACAAGCAGCAGCTCTCAAACATTGCCGTCTCTGGAAAGATGGAAAAACGATATTTTGAAGGTGTCCAGGACTGCAAGGAATTTCAAGGAGAGCTTTTTGGGATTTCCAATTTATTTCGAGATTTATCTGATGAGTTATTTACCAGTGAGATCATTGAATTGTATAAAGAAGTTGGGCATGAAACAGAACAATCAGAAAAAGTAAATCTGTCAGAAGAAGAAACATGTTCATCAGTACTGGAGTCAGAAACCAGATTATGTAATAAATCTGCGAGGGCTGCAGCAAGTAAACCAGATCTTGAAGACCTTGGCATTGTCTATACTCATCGCAATGAAGACATTGTCAACTTAGGCCCAGGGATTCAAGGGAAAATGGATACCAGCATCCCCTTAGATGATAGCCTAGTCAAGCCAAGCATCTCTTTGGACGACCACCAAAGAAAAAAAACAGATTGTGTACCTAAAAAACAGAAAGTTCCTTTGATTGATGAAAGGAAGAGAACCCAATATAGGCTCCTTGCTCGGTTTATGGGCATGGGAGAGCTTGCATTTAGCAAATGGTTACTATCAGCAACTCCACTGGAGAGAGAAAAAGTGCTTCTTGACTACAAGAAGAAAAAAGAAGATACCTAA 2646 0.4131 MSLQALKESLRSCSNQKPSSSSSSSSITQTRPNSILLESDSLFPLHRKPPKSSLAHQLRRLEDSLTQTHPKTLQQQQQQQQEKEKETEEEEEDEEEEPEIKRAKFASPKLPHFQFEPTGPFEPLLLSSHGEFPVVQVPASINCRLLEHQREGVRFLYGLYKNNHGGILGDDMGLGKTIQAIAFLAAVFGKEGHSTLNENQVEKRDPALIIGPTSVIHNWESEFSKWSNFSVSIYHGANRDLIYDKLEANGVEILITSFDTYRIHGSSLLDFNWNIVIVDEAHRLKNEKSKLYKACLEMKTLRRYGLTGTAMQNKIMELFNLFDWVAPGSLGTREHFREFYDEPLKHGQRSTAPDRFVQIANKRKQHLVAVLHKYMLRRTKEETIGHLMMGKEDNIVCCAMSDVQKRVYKRMLQLPDIQCLINKSRPCSCGSPLTQVECCKRIVPDGVIWPYMHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPDKQSKDAEFAAAVFGPDIDLVGGNTQNESFMGLSDVKHCGKMQALEKLLFSWFSQGDKVLLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVVVFRLLAAGSLEELVYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFQGELFGISNLFRDLSDELFTSEIIELYKEVGHETEQSEKVNLSEEETCSSVLESETRLCNKSARAAASKPDLEDLGIVYTHRNEDIVNLGPGIQGKMDTSIPLDDSLVKPSISLDDHQRKKTDCVPKKQKVPLIDERKRTQYRLLARFMGMGELAFSKWLLSATPLEREKVLLDYKKKKEDT 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0870 881 SMART ultradead3 141 336 IPR014001 -
Aed5g0870 881 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 157 328 IPR014001 -
Aed5g0870 881 Gene3D - 390 755 IPR027417 -
Aed5g0870 881 MobiDBLite consensus disorder prediction 1 37 - -
Aed5g0870 881 Pfam SNF2-related domain 161 419 IPR000330 GO:0005524|GO:0140658
Aed5g0870 881 MobiDBLite consensus disorder prediction 1 107 - -
Aed5g0870 881 SMART helicmild6 563 646 IPR001650 -
Aed5g0870 881 CDD SF2_C_SNF 528 657 - -
Aed5g0870 881 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 22 862 - -
Aed5g0870 881 Pfam Helicase conserved C-terminal domain 534 646 IPR001650 -
Aed5g0870 881 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 272 699 IPR027417 -
Aed5g0870 881 Gene3D - 126 377 IPR038718 -
Aed5g0870 881 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 537 690 IPR001650 -
Aed5g0870 881 PANTHER SNF2/RAD54 FAMILY MEMBER 22 862 - -
Aed5g0870 881 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 378 IPR027417 -
Aed5g0870 881 Coils Coil 71 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0870 Aed-Chr5 6569700 6576432 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0870 535 676 RAD5 or RAD16-like Gene Family AT5G43530 39.437 5.85e-23 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aed5g0870 SNF2_N 2.3e-53 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0870 K20098 - gmx:100781003 1575.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0870 5 6569700 6576432 Aed5g0870 5 6569700 6576432 ECH