Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0862 ATGGATCGGCTTGGAATTATTCAACCCTCTAATTCTTCAACCAAGGTTGAAAGAAGGATAGTGGAGAAAAACAGAAGAAACCAGATGAAGATCCTCTACAACAAACTCAACTCTCTTCTCCCTACCTATAACCCCAAGGAAGCAGTACCACTGCCTGACCAAGTGGATGAGGCAATCAACTACATCAAGAGTTTGGAGGCAAAGGTGAAGATGGCAAGTGAGAAAAAAGAGAGTTTAGAGGGAATTAGAAAGAGATCACGTGGTTGCAGCAGCTTCTCCTCTAATAATAACAACAGTGCCAAATTTGCTGCAACTAATTCGTCTGGTTTATCAAAACCGCCACAACTTGAGATTCACGAAGTGGGTTCCACTCTACAAGTTGTTCTGACTTGTGGGTTGGACCACCAGTTCATTTTCTATGAGATCATTCGAATGCTGCATGAAGAGAACATTGAGGTTAGAAGCGCTAATTCCTCACTCGCTGGAGACTCAGTGCTTCATGTTGTGCATGCTGAGGTTCCTCAATCTTTTCTTCAATTCGGAGCCACCAAAGTAAGTGAGAGATTGAAAAGGTTTGTGAGTGGATCCTGCAGTGACGTGGAGACACAACCCGAGTTGTGGGATTTTGAAATTGGAATTGATGATATGTGGGGTTTCTAG 660 0.4318 MDRLGIIQPSNSSTKVERRIVEKNRRNQMKILYNKLNSLLPTYNPKEAVPLPDQVDEAINYIKSLEAKVKMASEKKESLEGIRKRSRGCSSFSSNNNNSAKFAATNSSGLSKPPQLEIHEVGSTLQVVLTCGLDHQFIFYEIIRMLHEENIEVRSANSSLAGDSVLHVVHAEVPQSFLQFGATKVSERLKRFVSGSCSDVETQPELWDFEIGIDDMWGF 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0862 219 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 11 200 IPR015660 GO:0003700|GO:0006357
Aed5g0862 219 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 65 IPR011598 GO:0046983
Aed5g0862 219 SMART finulus 19 71 IPR011598 GO:0046983
Aed5g0862 219 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 11 80 IPR036638 GO:0046983
Aed5g0862 219 Gene3D - 5 91 IPR036638 GO:0046983
Aed5g0862 219 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 11 200 - -
Aed5g0862 219 Coils Coil 55 82 - -
Aed5g0862 219 Pfam Helix-loop-helix DNA-binding domain 16 66 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0862 Aed-Chr5 6520066 6521357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0862 7 195 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 38.384 2.41e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed5g0862 HLH 7.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0862 - - gmx:100817883 367.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0809 1 8911134 8912217 Aed5g0862 5 6520066 6521357 PCT