Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0860 ATGTCTACCCTTCTCATCTCTTCGCTTCTTTTCATCATTACAAACCTTACCCTTCTTCTAACCTCAGTTTCATGCACAGAGTTCATCTACAACACCAACTTCACCTCCACCAACACCCTTGTACTCGGCAACGCCACCATAGAATCGTCCATCCTCAGCCTCACCAACAGTTCCACCTTCTCCGTTGGCCGTGCTTTCTACCTTTCCAAGATCCCCACAAAATCTTCCAACTCTTCAACCCCTTTACCCTTCTCAACCTCCTTCATCTTCTCCATTGCCCCATTCAAAGACCTTCTGCCTGGCCATGGCTTTGTCTTCATCTTAACACCTTCTGCAGACATCACTGGGGTGAGTTCTGCTCAGCATCTTGGTCTCTTCAACTTGACCAACAACGGTGATCCCAACAACCATGTCTTTGGCGTTGAGTTCGATGTGTTTGACAACCAAGAGTTCAATGACATCAATGAGAACCATGTTGGGGTGGACATAAACTCTCTTTCTTCTTTTGCTTCCCATGATGCTGGATTTTGGGGTGGGAAGGATGGTGAGGAGTTTGAGGATTTGAAGCTTAATGATGGTGAGAACTATCAGGTGTGGATTGAGTATTTGGATTCTAGAGTTAATGTCACAATGGCTCCTGCAGGCCAAAAAAGGCCTCAAAGTCCCTTGATTAGTGAAATTGTGGATCTTTCTGAAGTTCTTTTGGATGAAATGTATATTGGATTTTGTGGGGCAACAGGGCAGCTTGTGGAGAGTCATAAGATTTTGGCTTGGAGCTTCAGTAACACTAATTTTTCTATTGGTGATGCTTTGGTTACTACAAATTTGCCTTCATTTGTGCTTTCCAATGAGTCTATTTTGAGGTCAACAGGCTTTATTGTAGGGATCATTGTTGGTGTGTTGTTTATCATTGGTAGTGCTGTTGTGATACTTGTGCTTTTTCTCAGAAGAAAAAGGAGCAAGAGAAAGGACGTAGAAGAAGAAGACATTGAGGATTGGGAATTAGAGTATTGGCCACACCGTGTAAGGTATGAAGACATATATGCTGCAACTGAAGGATTTTCAGACGAAAATGAAATTGGGTTTGGAGGGAATGGGAAAGTCTATAAAGGGCTTCTGCAAGGAGTGCAAGTTGCAGTGAAAAGAATTCCCTGTGACAGTGGACATGGATTGAGAGAGTTTTTGTCTGAGATTTCAAGTTTAGGAAGGTTGAAGCATAGGAATGTGGTTCCATTGAGAGGTTGGTGTAAGAAAGATAGGAGCTTGATCTTAATCTATGACTATATGGAAAATGGTAGTTTAGATAAAATAATATTTGATGGTGGTGATGAGAACACAACTTTTGGGTGGGAGAAGAGACTAAAGGTGGTGTGTGGGAGAAGGCCAAATGAAGAAAACAAGCCGGCTTTGGTTACTTGGTTGTGGAGGCTAAAGGAGAGAGGAGAAGAGTGTTCTGGTGTTGATGAAAGATTGAAAGAGAGGGGTGAATGTAGTAATAGTAATATTGATGAGGTTAAGAGGGCGCTTCATCTTGGTTTGTTGTGCACTCATCCTGACCCTCATGTTAGGCCAAGTATGAGACAGGTTGTGAAGGTGCTGGAGGGAGAGAGTTTAGATATGACGTTGCTTGACAAAATCAATTCAGCAGCTGGATATGTTGGGAGCTTTGTTAATAGGTTTCACCCCACAATTGAGGATGTTTACTCCTCAAAGTACTCTTTCACAACTCTGAGTGACAATGAGGGCAGATGA 1752 0.4269 MSTLLISSLLFIITNLTLLLTSVSCTEFIYNTNFTSTNTLVLGNATIESSILSLTNSSTFSVGRAFYLSKIPTKSSNSSTPLPFSTSFIFSIAPFKDLLPGHGFVFILTPSADITGVSSAQHLGLFNLTNNGDPNNHVFGVEFDVFDNQEFNDINENHVGVDINSLSSFASHDAGFWGGKDGEEFEDLKLNDGENYQVWIEYLDSRVNVTMAPAGQKRPQSPLISEIVDLSEVLLDEMYIGFCGATGQLVESHKILAWSFSNTNFSIGDALVTTNLPSFVLSNESILRSTGFIVGIIVGVLFIIGSAVVILVLFLRRKRSKRKDVEEEDIEDWELEYWPHRVRYEDIYAATEGFSDENEIGFGGNGKVYKGLLQGVQVAVKRIPCDSGHGLREFLSEISSLGRLKHRNVVPLRGWCKKDRSLILIYDYMENGSLDKIIFDGGDENTTFGWEKRLKVVCGRRPNEENKPALVTWLWRLKERGEECSGVDERLKERGECSNSNIDEVKRALHLGLLCTHPDPHVRPSMRQVVKVLEGESLDMTLLDKINSAAGYVGSFVNRFHPTIEDVYSSKYSFTTLSDNEGR 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0860 583 Gene3D Transferase(Phosphotransferase) domain 1 335 457 - -
Aed5g0860 583 ProSiteProfiles Protein kinase domain profile. 354 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g0860 583 PANTHER - 24 456 - -
Aed5g0860 583 Gene3D Transferase(Phosphotransferase) domain 1 458 546 - -
Aed5g0860 583 PANTHER - 455 577 - -
Aed5g0860 583 Gene3D - 24 273 - -
Aed5g0860 583 SUPERFAMILY Protein kinase-like (PK-like) 329 535 IPR011009 -
Aed5g0860 583 ProSitePatterns Protein kinases ATP-binding region signature. 360 381 IPR017441 GO:0005524
Aed5g0860 583 CDD lectin_legume_LecRK_Arcelin_ConA 26 263 IPR001220 GO:0030246
Aed5g0860 583 Pfam Protein tyrosine and serine/threonine kinase 357 441 IPR001245 GO:0004672|GO:0006468
Aed5g0860 583 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VII.2-RELATED 24 456 - -
Aed5g0860 583 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VII.2-RELATED 455 577 - -
Aed5g0860 583 Pfam Legume lectin domain 26 264 IPR001220 GO:0030246
Aed5g0860 583 CDD TM_EGFR-like 289 323 - -
Aed5g0860 583 SUPERFAMILY Concanavalin A-like lectins/glucanases 20 263 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0860 Aed-Chr5 6502832 6504859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0860 23 459 Receptor kinase-like Gene Family AT4G04960 57.143 7.23e-165 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Aed5g0860 Lectin_legB 1.3e-62 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0860 - - gmx:100807059 781.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0811 1 8937266 8939341 Aed5g0860 5 6502832 6504859 PCT
Aed5g0860 5 6502832 6504859 Aed1g0812 1 8940413 8942488 PCT