Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0858 ATGGGTTGCTTATGTTCTAAGAGTTCAGCTGTGGAGGACAGCAAGGAAGGTGTCACTAAGAAATTTCAATCGTATAGCACAAGGCCTTCAGAGTTGAATGTTTTGCGGTTGAATTCAACTAGGAGGGTTGACGAGGGTCGGGTAAAAGATGTGTTAATAGATGGTGGTCATGTGAAAGGTTCATTGATTGACAAGAAGGCCAATGTTTCAGGGAAGTTGTATGGTGATCACGATGTAAAGAAGAAATTAGAGAAGCCGGAATTGATGATTGTGAATCATATTGACCCTGGAAGGGTTCCAAAGGCTATAGAAGGAGAGCAAGTCACGGCAGGATGGCCGGCATGGCTTTCTTCTGTTGCTGGTGAAGCTATCAAGGGATGGATACCACGGAGTGCGAATACTTTTGAGAGGTTGCATAAAATTGGGCAAGGAACTTACAGCACTGTATATAAGGCACGGGATGTGATTAACCAAAAGTTTGTTGCACTGAAGAAAGTACGCTTTGACAATCTTGATCCCGAGAGTGTCAAATTTATGGCAAGGGAAATCCATGTTCTGCGTAGGCTTGACCATCCAAACATAATAAAATTGGAGGGCTTGATAACATCACAGATGTCTCGCAGTTTGTACCTTGTTTTTGAGTATATGGAGCATGATCTTACAGGACTTGCATCAAATCCTGATATTAAGTTCTCTGAACCACAGCTGAAATGCTACATGCAGCAACTTCTTAGTGGATTGGATCATTGCCATAGTCATGGTGTCCTCCATCGTGACATAAAGGGCTCAAATCTTCTCATTGACAATAATGGAGTCTTAAAGATTGCTGATTTTGGCTTGGCAAGTTTTTATGACCCCCACCACAATGTTCCATTGACAAGCCGAGTAGTAACTCTGTGGTATAGACCACCAGAACTTTTACTTGGAGCCAATCATTATGGGGTTGCAGTGGATTTGTGGAGTTCTGGTTGCATACTGGGGGAACTATATACTGGAAGACCAATTTTGCCCGGTAAAACCGAGGTAGAGCAGTTGCATCGGATTTTTAAACTCTGTGGCTCACCATCTGACGACTATTGGCTTAAATTGCGGTTGTTGCATTCAACAGTTTTCAGGCCGCCACACCATTATAGGCGATGTGTTGCAGATACATTTAAGGACTACCCATCTACTGCGGTAAAGCTTATAGAGACTCTACTTTCTGTAGAGCCAGCACATCGTGGGACTGCAGCAGCTGCTCTGAAAAATGAGTTCTTTACATCTGAGCCTCTGCCTTGTGATCCATCAAGTTTACCAAAATATGTTCCCAGCAAGGAGATTGATGCTAAATTACGGGATGAAGCCAGAAGGCAAGGAGCTGTTGGAGGTAGGGAGCAAAAAGTTGCCTCAGGAGTTAGACAAGAAAAAGGACACAGGGCAAATGTCACAACAGCGAAAGACAATGCTGACACTGGCTTATCAGTGCAGCAAGGACGTTATTCCAGCTCAAGGAACCAAAGTGAATTATCCAACCCTCATAGAAGACCGGTGTCTGGAATTCTGGTTTTCCCTCACAAACAGTCAGAAGATGTTAAAGAAATAGATAGTAATTTCTCTGGGCATCTTTATAAGAGGCCTTCACATTCAGGCCCATTGGTTCCTGGTTCTGTCTGGGCAAAAGGCAGGAAGGAAGTTGATGATGTGCCTCCTGTTTCAAACAGAGTGAACCTATCAAAACTATCTGGGCTAGTGGCATCTAGAACTGTGTCTGAAGATCAGGAGGTTAAACCTGTTCACTTGCACCACAGAAAACCAACTGGAGTAAGAAAGTCTGTGGAGTCAACTAATGGATCAGAGTCAAGAAGAAGGCAGGATCAAAAACGGATTGGTGATCTCAATCAAATTGAAAGTAGAAGGACCCCAGCTGAAAAATCCACTCCGGGTGGGCGCGAGTCCATGGGAAACAAGATATACCTCTCAGGTCCATTATTGGTTTCATCAGGCAACATGGATCAGATGCTCAAAGATCATGACAGAAAGATCCAAGAGTTTTCAAGACGAGCAAGAATTGACAAGTCAAGAGCAAGAGGTGAGAATGTTCGTGCACAGCGGAAGTAG 2097 0.4378 MGCLCSKSSAVEDSKEGVTKKFQSYSTRPSELNVLRLNSTRRVDEGRVKDVLIDGGHVKGSLIDKKANVSGKLYGDHDVKKKLEKPELMIVNHIDPGRVPKAIEGEQVTAGWPAWLSSVAGEAIKGWIPRSANTFERLHKIGQGTYSTVYKARDVINQKFVALKKVRFDNLDPESVKFMAREIHVLRRLDHPNIIKLEGLITSQMSRSLYLVFEYMEHDLTGLASNPDIKFSEPQLKCYMQQLLSGLDHCHSHGVLHRDIKGSNLLIDNNGVLKIADFGLASFYDPHHNVPLTSRVVTLWYRPPELLLGANHYGVAVDLWSSGCILGELYTGRPILPGKTEVEQLHRIFKLCGSPSDDYWLKLRLLHSTVFRPPHHYRRCVADTFKDYPSTAVKLIETLLSVEPAHRGTAAAALKNEFFTSEPLPCDPSSLPKYVPSKEIDAKLRDEARRQGAVGGREQKVASGVRQEKGHRANVTTAKDNADTGLSVQQGRYSSSRNQSELSNPHRRPVSGILVFPHKQSEDVKEIDSNFSGHLYKRPSHSGPLVPGSVWAKGRKEVDDVPPVSNRVNLSKLSGLVASRTVSEDQEVKPVHLHHRKPTGVRKSVESTNGSESRRRQDQKRIGDLNQIESRRTPAEKSTPGGRESMGNKIYLSGPLLVSSGNMDQMLKDHDRKIQEFSRRARIDKSRARGENVRAQRK 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0858 698 Pfam Protein kinase domain 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g0858 698 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Aed5g0858 698 MobiDBLite consensus disorder prediction 665 698 - -
Aed5g0858 698 MobiDBLite consensus disorder prediction 477 506 - -
Aed5g0858 698 ProSitePatterns Protein kinases ATP-binding region signature. 141 164 IPR017441 GO:0005524
Aed5g0858 698 PANTHER CELL DIVISION PROTEIN KINASE 1 685 - -
Aed5g0858 698 MobiDBLite consensus disorder prediction 462 476 - -
Aed5g0858 698 SUPERFAMILY Protein kinase-like (PK-like) 128 427 IPR011009 -
Aed5g0858 698 PANTHER CYCLIN-DEPENDENT KINASE 1 685 - -
Aed5g0858 698 ProSiteProfiles Protein kinase domain profile. 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g0858 698 Gene3D Transferase(Phosphotransferase) domain 1 218 457 - -
Aed5g0858 698 MobiDBLite consensus disorder prediction 579 698 - -
Aed5g0858 698 MobiDBLite consensus disorder prediction 449 509 - -
Aed5g0858 698 SMART serkin_6 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g0858 698 CDD STKc_CDK9_like 135 419 - -
Aed5g0858 698 MobiDBLite consensus disorder prediction 608 631 - -
Aed5g0858 698 Gene3D Phosphorylase Kinase; domain 1 122 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0858 Aed-Chr5 6486795 6493545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0858 127 461 Core Cell Cycle Gene Families AT5G10270 48.148 2.37e-109 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Aed5g0858 Pkinase 6.8e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0858 - - gmx:100807590 1303.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0858 5 6486795 6493545 Aed5g0858 5 6486795 6493545 ECH
Aed1g0813 1 8943240 8948828 Aed5g0858 5 6486795 6493545 PCT