Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0848 ATGGCCTTAGAACACTTTGAGGAGACTGTGTCCCAAAAAGAAAAGTGGATGTCTTCCAGTGAAATAATTGCAGATTCTGATAGAAATGCCTCTGGTGGCTTTGACTGCAACATCTGCTTAGAGTGTGTGCAAGATCCAGTGGTCACACTTTGTGGTCATCTCTATTGCTGGCCTTGCATATACAAATGGCTTCATTTTCAAAGTACCTCTTTGGATAATGAAGAGCAACAGAAGCCACAATGTCCTGTGTGCAAATCAGAAGTTTCTCAATCCTCCCTTGTTCCATTATATGGCCGCGGCCAAGCCACAACACCTTCTAAAGGGAAGCCACTTCAAGTAGGAACTGTCATACCACAAAGACCTCAAGGTCCTAGATCATTGAACTTGAACACTAGAAGTGTTTCCCAACCTATTTCTCAAATTTATCATCATCCTTATAGTAATCCTTATCAACCTCAACAATTCAACTCAATTTCAAGCGGTTACGCCTCACCAATGCTTAGAACAAATGGTGCACTTGACAATTCATTTGGAATCTTTGGTGAGATGATATATGCAAGAGTCTTTGGTAACCAAGTGTCAAACATTCATACATATGCGAATTCGTACAATCTTTCAGGGACCAGTAACCCAAGGTTGAGAAGACATTTAATGAAAGTTGATAAATCACTCAGCAGAATAAGCTGTTTCCTCCTATGCTGCCTCGTTTTGTGTCTTCTGTTATTCTGA 729 0.406 MALEHFEETVSQKEKWMSSSEIIADSDRNASGGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLHFQSTSLDNEEQQKPQCPVCKSEVSQSSLVPLYGRGQATTPSKGKPLQVGTVIPQRPQGPRSLNLNTRSVSQPISQIYHHPYSNPYQPQQFNSISSGYASPMLRTNGALDNSFGIFGEMIYARVFGNQVSNIHTYANSYNLSGTSNPRLRRHLMKVDKSLSRISCFLLCCLVLCLLLF 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0848 242 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 7 242 - -
Aed5g0848 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 107 IPR013083 -
Aed5g0848 242 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 7 242 IPR045103 GO:0005783|GO:0006511|GO:0061630
Aed5g0848 242 ProSitePatterns Zinc finger RING-type signature. 51 60 IPR017907 -
Aed5g0848 242 ProSiteProfiles Zinc finger RING-type profile. 36 85 IPR001841 -
Aed5g0848 242 MobiDBLite consensus disorder prediction 102 127 - -
Aed5g0848 242 CDD RING-HC_AtRMA_like 34 86 - -
Aed5g0848 242 Pfam RING-type zinc-finger 36 82 IPR027370 -
Aed5g0848 242 SMART ring_2 36 84 IPR001841 -
Aed5g0848 242 SUPERFAMILY RING/U-box 33 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0848 Aed-Chr5 6406472 6407200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0848 21 242 C3H Transcription Factor Family AT4G28270 39.394 6.24e-47 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0848 K10666 - gmx:100786373 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0848 5 6406472 6407200 Aed5g0848 5 6406472 6407200 ECH