Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0839 ATGCACACAATGCAGCTCCAGCGTGTCTCCTCCGCGTCGAAACTGAGCCTCACGTGTCTCAGCCTCGCCTTGAAACTCGTGCTGCTGTACGCGGCGGAGGCGCAGCCTCAGCACCGCGGCCCCGACCTACATTGGTACCCCGGAGTCGCCACCTGGTACGGCGACCCCGAAGGAGACGGCAGCACCGGTGGGGCATGTGGGTATGGGACGATGGTGGATGTGAAGCCGTTCAGGGCTCGGGTGGGAGCGGTGGGACCCGTTCTGTTCATGAAGGGGGAAGGGTGCGGTGCGTGCTACAAGGTGAAGTGTTTGGATAAGAGCATATGTTCGAGAAGAGCAGTCACAGTCATAATTACCGACGAGTGCCCCGGTTGCCCCTCTGACCAAACGCACTTCGATCTCAGTGGCGCCGCGTTTGGCCGCATGGCTATTTCTGGCGAGAACGCTCCTCTCAGAGACCGTGGTCAAATCCCTGTCATTTACCGCAGAACACCGTGTAAATATCCGGGAAGAAAAATTGCCTTTCATGTTAACGAAGGCTCCACACCATTTTGGCTATCACTTCTGGTTGAGTTTGAGGACGCAGAGGGAGATATTGGCTCCATGCATATACGAGAAGCAGGGTCTACAGAGTGGCTACAAATGAATCACCTATGGGGTGCAAATTGGTGCATTATTGGAGGACCTTTAAAGGGACCATTCTCAGTGAAATTGAGCTCTTCCTCTGGGAGAAGCCTCTCTGCAAGAGATGTTGTTCCAAGCAATTGGGTTCCAAAGGCCACTTACACCTCTCGCCTAAATTTCTACCCCTAG 813 0.5461 MHTMQLQRVSSASKLSLTCLSLALKLVLLYAAEAQPQHRGPDLHWYPGVATWYGDPEGDGSTGGACGYGTMVDVKPFRARVGAVGPVLFMKGEGCGACYKVKCLDKSICSRRAVTVIITDECPGCPSDQTHFDLSGAAFGRMAISGENAPLRDRGQIPVIYRRTPCKYPGRKIAFHVNEGSTPFWLSLLVEFEDAEGDIGSMHIREAGSTEWLQMNHLWGANWCIIGGPLKGPFSVKLSSSSGRSLSARDVVPSNWVPKATYTSRLNFYP 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0839 270 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 184 264 IPR007117 -
Aed5g0839 270 PRINTS Expansin/Lol pI family signature 44 59 IPR007118 GO:0005576
Aed5g0839 270 PRINTS Expansin/Lol pI family signature 62 80 IPR007118 GO:0005576
Aed5g0839 270 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Aed5g0839 270 PRINTS Expansin/Lol pI family signature 85 103 IPR007118 GO:0005576
Aed5g0839 270 PRINTS Expansin/Lol pI family signature 212 226 IPR007118 GO:0005576
Aed5g0839 270 PRINTS Expansin/Lol pI family signature 250 264 IPR007118 GO:0005576
Aed5g0839 270 PANTHER EXPANSIN-B3 9 270 - -
Aed5g0839 270 Gene3D - 31 166 IPR036908 -
Aed5g0839 270 SUPERFAMILY PHL pollen allergen 171 264 IPR036749 -
Aed5g0839 270 SMART dpbb_1 81 161 IPR007112 -
Aed5g0839 270 Pfam Expansin C-terminal domain 173 253 IPR007117 -
Aed5g0839 270 Gene3D - 167 265 IPR036749 -
Aed5g0839 270 Pfam Lytic transglycolase 86 160 IPR009009 -
Aed5g0839 270 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 63 171 IPR007112 -
Aed5g0839 270 PRINTS Major pollen allergen Lol pI signature 143 158 IPR005795 GO:0005576|GO:0019953
Aed5g0839 270 PRINTS Major pollen allergen Lol pI signature 240 257 IPR005795 GO:0005576|GO:0019953
Aed5g0839 270 PRINTS Major pollen allergen Lol pI signature 191 206 IPR005795 GO:0005576|GO:0019953
Aed5g0839 270 PRINTS Major pollen allergen Lol pI signature 121 136 IPR005795 GO:0005576|GO:0019953
Aed5g0839 270 PRINTS Major pollen allergen Lol pI signature 175 190 IPR005795 GO:0005576|GO:0019953
Aed5g0839 270 PANTHER EXPANSIN-LIKE PROTEIN B1 9 270 - -
Aed5g0839 270 SUPERFAMILY Barwin-like endoglucanases 44 170 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0839 Aed-Chr5 6338174 6341790 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0839 17 206 Expansin Gene Family AT4G28250 70.526 6.93e-97 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0839 K20628 - gmx:100804525 509.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0839 5 6338174 6341790 Aed5g0839 5 6338174 6341790 ECH