Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0838 ATGGGTGTTCTTCAGTCTACACTTCTCTACTTGATCTTACTACACACATGCAAGATTGTTGCTTTCAAGGACCAAGTGTGGAAGAAAGCCACTGCAACTTATGCCAAGGACTCAGAAGGGTCTCTCATTACCGAAGGGGCTTGTGGCTATGGAGATCTCCACAGGGCCAGTTATGGAAAACACAGTGCTGGTTTAAGCACCATTTTGTTCAACAGAGGGAGCTCATGTGGGGCTTGCTATGAAATCAGGTGTGTTGATCACATCTTGTGGTGTGTGATGGGAAGCCCCTCTGTGGTTGTTACTGTTACAGATTTCTGTGCTCCAAATTATGGGCTTTCTGTTGATTATGGTGGCTGGTGCAATTTTCCAAGAGAGCATTTTGAGATGTCAAGGGCTGCATTTGCTGAAATTGCCAAGAGTAAAGCTGATATAGTGCCGGTTCAAGTAAAGTGTGACAGAAGTGGTGGCATGAGATTCACAATGAGTGGGAGTTCTCACTTCTATCAAGTTCTGATTTCCAATGTTGGTCTGGATGGTGAAGTGTTTGCTGTGAAAGTGAAGGGATCTAGAACAGGTTGGATACCAATGGCAAGGAACTGGGGACAAAACTGGCATTGCAATTTCAACTTCCAAAATCAGCCTTTGTCCTTTGAGGTAACCAGCAGCAGTGGAAAAACACTCACATCTTACAATGTAGCACCCGGAAACTGGATGTTTGGACAGACATTTGAAGGAAAACAGTTTCAGGATGAGTAG 756 0.4444 MGVLQSTLLYLILLHTCKIVAFKDQVWKKATATYAKDSEGSLITEGACGYGDLHRASYGKHSAGLSTILFNRGSSCGACYEIRCVDHILWCVMGSPSVVVTVTDFCAPNYGLSVDYGGWCNFPREHFEMSRAAFAEIAKSKADIVPVQVKCDRSGGMRFTMSGSSHFYQVLISNVGLDGEVFAVKVKGSRTGWIPMARNWGQNWHCNFNFQNQPLSFEVTSSSGKTLTSYNVAPGNWMFGQTFEGKQFQDE 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0838 251 Pfam Lytic transglycolase 63 149 IPR009009 -
Aed5g0838 251 Gene3D - 156 248 IPR036749 -
Aed5g0838 251 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
Aed5g0838 251 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Aed5g0838 251 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Aed5g0838 251 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Aed5g0838 251 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Aed5g0838 251 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Aed5g0838 251 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Aed5g0838 251 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Aed5g0838 251 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Aed5g0838 251 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Aed5g0838 251 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Aed5g0838 251 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Aed5g0838 251 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Aed5g0838 251 PANTHER EXPANSIN-A20 3 248 - -
Aed5g0838 251 SMART dpbb_1 62 149 IPR007112 -
Aed5g0838 251 SUPERFAMILY Barwin-like endoglucanases 26 174 IPR036908 -
Aed5g0838 251 SUPERFAMILY PHL pollen allergen 153 245 IPR036749 -
Aed5g0838 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 156 IPR007112 -
Aed5g0838 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Aed5g0838 251 PANTHER EXPANSIN-A15 3 248 IPR002963 GO:0009664
Aed5g0838 251 Gene3D - 13 151 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0838 Aed-Chr5 6331583 6332986 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0838 9 249 Expansin Gene Family AT4G38210 63.008 8.20e-113 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0838 - - gmx:100804002 501.13