LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed5g0830	ATGGAAAATAACAGTGGAAAGTCTGCCAAGGAGGGTGTTGAAGAGACTCATCACAAGGTGATTGGTGAAAGTGAAGGCCAAGATTGGGAGAAAGAGAAGGGAAAGAGTCTTGATTTGAGCCCAGGGAGGAGACAATGGAAGCCAGTTTTTGATGATGCTTCCGTGTCACATAGGCCTCTCAAGAAAACCCGTAGCCCAGAACGCGAAAACCCAAATCAACAACAACAACAACTATCCTCTATGGTATCTCTTCAACCTCCTTCATCAAGAATAGTGTTTCCTTTTGCTTTTGAAGGGTCTCAACACCCAATGCCATTCCCACAGTCATACCCTTTTGGATCCACAAACTTGCCTCTTTTTCGTCCACCTCTTCAGCCAACTCAACAAATGATATCTTTTGGGCCTCAACAGAACATGGGGTATCCACCATTCCTAGCCCCAGAATCCACCATTCCACACCAACACCAACAACAGCATCATCAACAGGTTCTTCAGTATTGGAGTAATGCACTGCATCTGAGTCCAAGAGGGAGGATGATGATGATGATGAATAGGACTGAAGGGAGACCAATGTTAAGGCCCCAAGCACAGCCTTTGAATGCTACCAAGCTCTATAGAGGAGTGAGGCAACGCCATTGGGGAAAATGGGTCGCTGAGATTCGTCTCCCTCGCAATCGAACTCGCCTCTGGCTTGGAACCTTCGACACTGCTGAAGATGCTGCCATGGCTTATGATCGCGAGGCCTTTAAGCTTAGAGGAGAGAATGCTAAGCTCAATTTTCCTGAACTCTTTCTCAACAAAGACAAAGCAGAAGAACCATCCACAATTGCTGCTCCTGCCTCTTCTTCAAATGAAGGTTCAACATCAACATCAAGCCAGAACACAAAGCAACCTGAACCAATACCAGAAGAGGCTAACACTGAGAGTGAGAACATGCCGCCAACAGAGACAATAATAGCAGAAGAGAATGCTGAAACTGGAGAAGGAATTTCACAGCCTCAGGAATTGGTTTGGGGTGAATGGTTCAATGCAATTCCTGCAGGTTGGGGTCCTGGAAGTCCTGTTTGGGATGATTTGGACCCCGACAATAATCTTCTTTTGCATTCACAACTTCCATTTGTGAATCCAAATCAGCAAGAGTTTCCTGATGCTGGTGCGTCTTCTCAGACACAACAAGAAGATAATAACAGCACAGAACCAGGTTCTTCCTCTCCCTCTTGTCCCATGAGGCCCTTCTTCTGA	1242	0.4614	MENNSGKSAKEGVEETHHKVIGESEGQDWEKEKGKSLDLSPGRRQWKPVFDDASVSHRPLKKTRSPERENPNQQQQQLSSMVSLQPPSSRIVFPFAFEGSQHPMPFPQSYPFGSTNLPLFRPPLQPTQQMISFGPQQNMGYPPFLAPESTIPHQHQQQHHQQVLQYWSNALHLSPRGRMMMMMNRTEGRPMLRPQAQPLNATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENAKLNFPELFLNKDKAEEPSTIAAPASSSNEGSTSTSSQNTKQPEPIPEEANTESENMPPTETIIAEENAETGEGISQPQELVWGEWFNAIPAGWGPGSPVWDDLDPDNNLLLHSQLPFVNPNQQEFPDAGASSQTQQEDNNSTEPGSSSPSCPMRPFF	413

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed5g0830	413	MobiDBLite	consensus disorder prediction	371	405	-	-
	Aed5g0830	413	SMART	rav1_2	204	267	IPR001471	GO:0003700\|GO:0006355
	Aed5g0830	413	ProSiteProfiles	AP2/ERF domain profile.	204	261	IPR001471	GO:0003700\|GO:0006355
	Aed5g0830	413	MobiDBLite	consensus disorder prediction	371	413	-	-
	Aed5g0830	413	CDD	AP2	203	263	IPR001471	GO:0003700\|GO:0006355
	Aed5g0830	413	MobiDBLite	consensus disorder prediction	50	68	-	-
	Aed5g0830	413	Pfam	AP2 domain	205	253	IPR001471	GO:0003700\|GO:0006355
	Aed5g0830	413	Gene3D	AP2/ERF domain	204	262	IPR036955	GO:0003700\|GO:0006355
	Aed5g0830	413	MobiDBLite	consensus disorder prediction	7	40	-	-
	Aed5g0830	413	MobiDBLite	consensus disorder prediction	276	313	-	-
	Aed5g0830	413	MobiDBLite	consensus disorder prediction	273	313	-	-
	Aed5g0830	413	PRINTS	Ethylene responsive element binding protein signature	205	216	IPR001471	GO:0003700\|GO:0006355
	Aed5g0830	413	PRINTS	Ethylene responsive element binding protein signature	227	243	IPR001471	GO:0003700\|GO:0006355
	Aed5g0830	413	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053	1	413	-	-
	Aed5g0830	413	SUPERFAMILY	DNA-binding domain	204	262	IPR016177	GO:0003677
	Aed5g0830	413	MobiDBLite	consensus disorder prediction	1	85	-	-
	Aed5g0830	413	MobiDBLite	consensus disorder prediction	69	85	-	-
	Aed5g0830	413	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061	1	413	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed5g0830	Aed-Chr5	6271033	6272274	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed5g0830	4	358	AP2-EREBP Transcription Factor Family	AT2G20880	44.353	8.91e-66	211

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Aed5g0830		AP2	2.7e-13	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed5g0830	-		-	gmx:100811328	696.427