Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0828 ATGGACCGGGCCTTGGCTAGCCCAATCTATCAACTGATTTCATGTGCTATTGGTGTTGGCTTACGTTTGTATATGGCACATTCTGTCCCTCTAACGTGTCAACATTCAGATGGTGCAACATCTTGTGTCGCTCTAACGTGGCAACATTCGGATGGTGCAAAATTGAAGCTGCATGTCATGACAACCAGAATTCCACAGAATATGGAGACTGTTCTTTTCAATCACTCCCCACCTTTGGAATTCAAGGGTTTGAGCAAGGAAGAGGAAGAGTCATTGCTAGGGCAAATTGAAATATGGAGGTACATGACAAGCTTCACGGACTCCATGGCCTTAAAAAGTGTGATAGAGCTACGCATCGCTGACATAATCGACCGATATGGTAAGCCACTATCCTTGTCGCAAATCATTGACAACATAGAAGATGCACCCTCCCCAGATGCCTCTCTTCTCCAGAGAGTGATGAGGGTGATGGTTCGCAGAAAGATCTTCAGTGCAGAACAATCAGAAACCGGAGAGACCCTCTATGGCTTGACACGTGCCTCCAAATGGATACTCCGTGACACAAAAATGACCCTTGCACCCATGCTACTGCTGGAGAATCACCCGATTCACATCAACCCTGCCCATTACATCAGTGAGATTATCAGAGAAGGAACCAAAGATGGCACTGCTTTCTTCAGGTTCCATGGCCATGAGCAGTTTGAGATGACTGGTTTGGATCCTGAGTATAACAGGTTGTTCAATGAGGGCATGGTGTGCACTGCTAGGGTTGTGTCCAAGGCTGTCATTAGTGGCTACAAAGACGGCTTCAACCAGCTTAAGTCCTTGGTTGATGTTGGAGGTGGCATTGGAGGCTCTCTTTCTGAGATTGTTAGGGCTTTCCCTCACATCAATGCCATCAACTTTGACTTGCCTCATGTTGTTGCCACTGCTCCTCACTATGATGGTATCACCCATGTTGGAGGTGACATGTTCGTCTCCATTCCCACTGCTGATGCTATTTACATGAAGTGGATTCTGCATGACTGGAGCGACGAGCACTGCGTGAAGATTCTGAAGAACTGCAGGAAGGCAATACCGGAGAAGACGGGAAAAGTGATAATCGTGGATCACGTGCTGCGGCCAGAAGGGAACGAGCCCTTCACCGACGTTGGGATTGCGTTTGACATGATGCTTCTGGCTCACAACGCTGGTGGCAAAGAGAGGACCGAGGAGAACTGGAAGTGGCTGTTCAAAGAAACTGGTTTCGCCCGTTACAACATCATCAAGATCAACGCTCTCCCATCCATCATTGAGGCTTTCCCAATCTAA 1311 0.4783 MDRALASPIYQLISCAIGVGLRLYMAHSVPLTCQHSDGATSCVALTWQHSDGAKLKLHVMTTRIPQNMETVLFNHSPPLEFKGLSKEEEESLLGQIEIWRYMTSFTDSMALKSVIELRIADIIDRYGKPLSLSQIIDNIEDAPSPDASLLQRVMRVMVRRKIFSAEQSETGETLYGLTRASKWILRDTKMTLAPMLLLENHPIHINPAHYISEIIREGTKDGTAFFRFHGHEQFEMTGLDPEYNRLFNEGMVCTARVVSKAVISGYKDGFNQLKSLVDVGGGIGGSLSEIVRAFPHINAINFDLPHVVATAPHYDGITHVGGDMFVSIPTADAIYMKWILHDWSDEHCVKILKNCRKAIPEKTGKVIIVDHVLRPEGNEPFTDVGIAFDMMLLAHNAGGKERTEENWKWLFKETGFARYNIIKINALPSIIEAFPI 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0828 436 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 190 433 IPR029063 -
Aed5g0828 436 SUPERFAMILY "Winged helix" DNA-binding domain 88 187 IPR036390 -
Aed5g0828 436 CDD AdoMet_MTases 276 373 - -
Aed5g0828 436 Pfam Dimerisation domain 109 158 IPR012967 GO:0046983
Aed5g0828 436 PANTHER (R,S)-RETICULINE 7-O-METHYLTRANSFERASE-LIKE ISOFORM X1 87 435 - -
Aed5g0828 436 Gene3D Vaccinia Virus protein VP39 186 436 IPR029063 -
Aed5g0828 436 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 99 435 IPR016461 GO:0008168
Aed5g0828 436 Pfam O-methyltransferase domain 210 416 IPR001077 GO:0008171
Aed5g0828 436 PANTHER O-METHYLTRANSFERASE 87 435 IPR016461 GO:0008168
Aed5g0828 436 Gene3D - 82 184 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0828 Aed-Chr5 6251322 6257898 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0828 109 422 Monolignol Biosynthesis Gene Families AT5G54160 38.941 1.01e-76 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0828 K22588 - gmx:100800801 700.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0828 5 6251322 6257898 Aed5g0828 5 6251322 6257898 ECH