Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed5g0825 | ATGGGTTGTTGTGTCTCAACAAGCAGTAAGAGTACTTGTAGCAGCAAGAGCAATGGAGACACGGTCTCTCCATCTTGCTTAGAAATTGGATGCTGTGGGCAAAAGAGAACAAGGAGAACATTCTCTGATCATGTTATTTCTCTCCAGCATTTACCATCCTTACCTAGCAGAATTTTCACCAATGGAAAGAGCCGCGGTTCGTGCATATTTACACAGCAGGGCCGCAAGGGTATTAATCAGGATGCCATGATTGTGTGGGAAGATTTCATGTCTGAAGATACGATCTTTTGTGGCATCTTTGATGGCCATGGTCCGCATGGTCATCTAGTTGCACGCAAAGTGAGGGATGCCTTGCCAATTAAGCTGATTTCATCTTTGCATTCAAATGAGTCAAAGCGAAATGGGTCAGGTAAAACTTGTTTCAAAGGGAATGTAAAACCCGATAGTGGAGACTCTGAGAAGGATTGCTCTGCTGAGGATGAACTGAACTCTACATGGAGAGAAGCTTTCATGAAGGCATACAAGGCTATGGACAAAGAGCTCCGGTCTCATCCGAATCTGGATTGCTTCTGTAGTGGGAGCACTGCTGTGACTATCGTGAAGCAGGTGTGGGATGTATTAAGCAACGAGGAGGTGGTTGAGATAGTATCTTCAGCGCCAACGCGATCATCAGCGGCAAGGATTCTGGTGGATTCTGCTGCTAGGGAGTGGAAACTCAAATACCCTACATCAAAGATGGATGACTGTGCTGTAGTATGCTTATTTTTGGATGGGAAAATGGACTCAGAATCTGATTATGAGGAACAAGGCTTTTCTTCTGCAACCATCCAGAGCAACCATTCGGGTAACCCCATCGAGTCAGATGATGGACAAAAGTCCGAGCCATCATTGCAAAGGAACTTCACTGTGAGATCCTCAGAAGAAAATGAGACAAATGGAGCACTATCTGTTGATGTTGTTGTTGAAGATGGAACATCATCAGCTGATGATCAAAACTGGTTAGGTTTGGAAGGGGTCACTCGTGTAAACTCACTAGTCCAACTACCTAGATTTTCTGAAGAAAGGCCAAACTCTTGA | 1077 | 0.4466 | MGCCVSTSSKSTCSSKSNGDTVSPSCLEIGCCGQKRTRRTFSDHVISLQHLPSLPSRIFTNGKSRGSCIFTQQGRKGINQDAMIVWEDFMSEDTIFCGIFDGHGPHGHLVARKVRDALPIKLISSLHSNESKRNGSGKTCFKGNVKPDSGDSEKDCSAEDELNSTWREAFMKAYKAMDKELRSHPNLDCFCSGSTAVTIVKQVWDVLSNEEVVEIVSSAPTRSSAARILVDSAAREWKLKYPTSKMDDCAVVCLFLDGKMDSESDYEEQGFSSATIQSNHSGNPIESDDGQKSEPSLQRNFTVRSSEENETNGALSVDVVVEDGTSSADDQNWLGLEGVTRVNSLVQLPRFSEERPNS | 358 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed5g0825 | 358 | PANTHER | ALPHABET, ISOFORM E-RELATED | 203 | 346 | - | - | |
| Aed5g0825 | 358 | PANTHER | ALPHABET, ISOFORM E-RELATED | 1 | 202 | - | - | |
| Aed5g0825 | 358 | SMART | PP2C_4 | 50 | 254 | IPR001932 | - | |
| Aed5g0825 | 358 | MobiDBLite | consensus disorder prediction | 266 | 316 | - | - | |
| Aed5g0825 | 358 | Gene3D | - | 58 | 201 | IPR036457 | - | |
| Aed5g0825 | 358 | PANTHER | PROTEIN PHOSPHATASE 2C 52-RELATED | 203 | 346 | - | - | |
| Aed5g0825 | 358 | PANTHER | PROTEIN PHOSPHATASE 2C 52-RELATED | 1 | 202 | - | - | |
| Aed5g0825 | 358 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Aed5g0825 | 358 | Gene3D | - | 202 | 269 | IPR036457 | - | |
| Aed5g0825 | 358 | SUPERFAMILY | PP2C-like | 57 | 258 | IPR036457 | - | |
| Aed5g0825 | 358 | ProSiteProfiles | PPM-type phosphatase domain profile. | 66 | 358 | IPR001932 | - | |
| Aed5g0825 | 358 | MobiDBLite | consensus disorder prediction | 267 | 313 | - | - | |
| Aed5g0825 | 358 | MobiDBLite | consensus disorder prediction | 128 | 157 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aed5g0825 | Aed-Chr5 | 6214850 | 6219762 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aed5g0825 | 203 | 358 | PP2C-type Phosphatase Gene Family | AT1G03590 | 63.975 | 4.00e-50 | 172 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aed5g0825 | - | - | gmx:100813306 | 402.134 |
Event-related genes