Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0800 ATGGGAAGAGTGCCTTGCTGTGACAAGAATAATGGACTCAAGAAGGGTCCATGGACACCAGAGGAAGACCTTCAACTCACCAACTACATTCAGATTCATGGACCAGGCAATTGGCGATCCCTCCCTCAAAATGCTGGTCTACAAAGATGTGGCAAGAGTTGCCGCCTTCGATGGACGAATTACCTGAGACCCGATATAAAGAGAGGAAGATTCTCCTTAGAAGAAGAAGATGTTATCATTCAGTTGCACAGTATCATGGGAAACAAATGGTCAGCTATAGCAGCTAGGTTACCAGGAAGAACTGACAATGAAATAAAGAACTATTGGAACACACACATTAGGAAGAGGCTACTTCGAATGGGAATTGACCCAGTCACACACACGCCACGCCTTGACATGTCCTCTATTCTAAGGTCAATGTTGGGTGATTACCCCTCCCTTTTGAACATGCAAGGGTTATTGGGTGCCCAAGTTTTGATGAACCAAGGGTTGCTAAAACTGGCTTCCACAATGCAAACGATCAATAATGATCATGAGAACCCAAATTTGGTTTCACAGAGTTATGAACAAAGCCAAGTTATTACCACCCCACAATCATCATTAGACTTGACTCAGTTTCAGTTTCAAATGCCTACTACTGATCAGACAAACAATGTTGTGGAAGGATTCTCGGGCACCGTGGCAAACTTGGGCTGTTTAAGTTCTCCTTGTGGTGATCAGAACCTTGTTTTGCAACAAAACCAAGTTGATTTGTTAGGGAACAGTGATGATGTTTTGGTGCACTTCCTCAACAATGCAAACCAAAACATGGGGTATGATGATTTGGTTATGCCTACACCTGTGTCAAGTCCAAACCAGTTGAATTCATCATCCAACTATGTGAGAAGTAGCTTTTGTAGTGACTTGTTCGAGTTTGGAATTCCGGAGAGTTTGGACATTGCTGATATTTTTTGCAATGTCTCACACACTAATTAA 975 0.4256 MGRVPCCDKNNGLKKGPWTPEEDLQLTNYIQIHGPGNWRSLPQNAGLQRCGKSCRLRWTNYLRPDIKRGRFSLEEEDVIIQLHSIMGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHTPRLDMSSILRSMLGDYPSLLNMQGLLGAQVLMNQGLLKLASTMQTINNDHENPNLVSQSYEQSQVITTPQSSLDLTQFQFQMPTTDQTNNVVEGFSGTVANLGCLSSPCGDQNLVLQQNQVDLLGNSDDVLVHFLNNANQNMGYDDLVMPTPVSSPNQLNSSSNYVRSSFCSDLFEFGIPESLDIADIFCNVSHTN 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0800 324 SMART sant 14 64 IPR001005 -
Aed5g0800 324 SMART sant 67 115 IPR001005 -
Aed5g0800 324 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Aed5g0800 324 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Aed5g0800 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Aed5g0800 324 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Aed5g0800 324 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Aed5g0800 324 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 312 - -
Aed5g0800 324 Gene3D - 14 67 - -
Aed5g0800 324 Gene3D - 70 117 - -
Aed5g0800 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Aed5g0800 324 CDD SANT 70 113 IPR001005 -
Aed5g0800 324 PANTHER TRANSCRIPTION FACTOR MYB41 1 312 - -
Aed5g0800 324 CDD SANT 17 62 IPR001005 -
Aed5g0800 324 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0800 Aed-Chr5 6042977 6044327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0800 1 251 MYB Transcription Factor Family AT4G05100 54.182 5.98e-89 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed5g0800 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0800 K09422 - gmx:100817731 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0800 5 6042977 6044327 Aed5g0800 5 6042977 6044327 ECH