Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0796 ATGGAGTTTGACCTTGAAAACCCTTTGGAAAATCTTCACTCCGATGCTGTCTCTTACCTCTTCCTCATTGAATCTGACCACACCCCATCACTGAATCACTCTCACATCTCTGTCAGAAGAGAACTCATTTCATTAATCTCTCAGTTCTCCTGTACTTTGGATCCGGTTTTGTCTTACCTTGCTATCAACTATCTGGACCGGTTCCTAGCCAACCAAGGGATTTTGCAACCAAAGCAATGGGCACTTAGGCTCATTGCTGTGTCATGCATTTCTCTAGCTGTGAAGATGATGAGAACGGATCAATACCCTGCCACTGATATCCAGGCCCTTTTGAATCAAAGTGATGGTGGCATCATCTTTGAGACACAAACAATACAAAGAATGGAAACGCTTATCTTGGGAGCATTACAATGGAGAATGAGATCGATCACCCCATTCTCTTTCGTGCCTTTTTTCATTGCCTTGATGGGGCTCAAAAGCTCGCCAATGGGGCAGGTTCTGAAAAACCGTGCCTCTGAGATCATATTCATGTCACAAAGAGAGATAAGACTTTGGGAATTCAAGCCATCTATAATTGCTGCATCTGCCCTTCTGTGTGCTTCTCATGAGTTGTTTCCTTTTCAATATCCGTCCTTCTTAAAAGCAATATCCGATTCTTCATATGAAAGCGTGGAGCAGTGCTACAAAGGGTTACAAGACATAGCAATAGAGGAAGAGTACTCGTCTGCGTTGAATGGGGTTTCAAGGTCAGACACACCGATTAATGTGTTGGACCATCATTTTCTGAGTTCAGAAAGTGAAAAAACCAACGGAATCACTACCGTTGCTGATTCTCCTCCTCTGAGGGACCTCAAAAGAAGGAAAATCACCACCGGTTGTGGGAACAACAATCCAACGATCCACAATTCTTGGATCAAACCATGCGAAGGAGAGTAA 936 0.4359 MEFDLENPLENLHSDAVSYLFLIESDHTPSLNHSHISVRRELISLISQFSCTLDPVLSYLAINYLDRFLANQGILQPKQWALRLIAVSCISLAVKMMRTDQYPATDIQALLNQSDGGIIFETQTIQRMETLILGALQWRMRSITPFSFVPFFIALMGLKSSPMGQVLKNRASEIIFMSQREIRLWEFKPSIIAASALLCASHELFPFQYPSFLKAISDSSYESVEQCYKGLQDIAIEEEYSSALNGVSRSDTPINVLDHHFLSSESEKTNGITTVADSPPLRDLKRRKITTGCGNNNPTIHNSWIKPCEGE 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0796 311 Gene3D - 142 229 - -
Aed5g0796 311 SUPERFAMILY Cyclin-like 125 236 IPR036915 -
Aed5g0796 311 SMART cyclin_7 40 134 IPR013763 -
Aed5g0796 311 PANTHER CYCLINS 5 288 IPR039361 -
Aed5g0796 311 Gene3D - 42 141 - -
Aed5g0796 311 Pfam Cyclin, C-terminal domain 143 239 IPR004367 -
Aed5g0796 311 Pfam Cyclin, N-terminal domain 36 140 IPR006671 -
Aed5g0796 311 SMART Cyclin_C_2 143 253 IPR004367 -
Aed5g0796 311 CDD CYCLIN 39 133 IPR013763 -
Aed5g0796 311 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 5 288 - -
Aed5g0796 311 SUPERFAMILY Cyclin-like 13 140 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0796 Aed-Chr5 6019869 6021554 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0796 1 291 Core Cell Cycle Gene Families AT4G03270 42.006 6.47e-64 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0796 K18812 - gmx:100783875 516.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0796 5 6019869 6021554 Aed5g0796 5 6019869 6021554 ECH
Aed1g0877 1 9318986 9321675 Aed5g0796 5 6019869 6021554 PCT