Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0794 ATGAGCGAGGAAGAGTACAATGTGGTAGCTTGTTTGTTCCTACTTTCCAATGCGAGACAAAGAAAGGAAGATGTTCATTTCGAGTGTTCTAGTTGCAACAAGATATTCGGGTCCCACCAGGCCTTAGGTGGACACTATGCCATTCACAAGAACATCAATGGCTATTTTGCCAACAACAGTGAAAATGATCATCAAGAAGACAACATGAATAACATGAGTGATGGTGGAGGCCACCAATGCAACATATGCTTAAGGGTGTTCTCTACGAGACAGGCCCTGGGTGGGCATAAGAGGTGTCACTGGGACAAAGGAGGAGGGAACATCCATAGCCACAACAACAATCTCCTCCTCCACTACTTGAATTTTCCTTCCATTCACTCTCTTCCTCCCTTTCCCCTCACTTTCGATTTGAGAATGAAGAGAGAATCTACAATTACATCTATAGATGGCCCCGCCCGCATCACCTACGCTTTCCTTGCAATTGCAACACTACCTTCCACCATTTTTACTCAGGACTCTGAAGTCTTGCAGGTGGTCAGAACTCTGGCGTTGATGTTTGTGGGGACAGTCTCCTCTGTATTCTTGGTATTTGCACCTCCACTTTTTGACCTTCAGGGTGTATGGCTGGGCTTAGTTCTCTTCATGGCTCTTCGTACGGCAGCTGGTGGTGTCAGGTAA 678 0.4631 MSEEEYNVVACLFLLSNARQRKEDVHFECSSCNKIFGSHQALGGHYAIHKNINGYFANNSENDHQEDNMNNMSDGGGHQCNICLRVFSTRQALGGHKRCHWDKGGGNIHSHNNNLLLHYLNFPSIHSLPPFPLTFDLRMKRESTITSIDGPARITYAFLAIATLPSTIFTQDSEVLQVVRTLALMFVGTVSSVFLVFAPPLFDLQGVWLGLVLFMALRTAAGGVR 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0794 225 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 100 IPR013087 -
Aed5g0794 225 SMART c2h2final6 27 49 IPR013087 -
Aed5g0794 225 SMART c2h2final6 78 100 IPR013087 -
Aed5g0794 225 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 1 114 - -
Aed5g0794 225 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Aed5g0794 225 ProSitePatterns Zinc finger C2H2 type domain signature. 29 49 IPR013087 -
Aed5g0794 225 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 1 114 - -
Aed5g0794 225 ProSiteProfiles Zinc finger C2H2 type domain profile. 27 54 IPR013087 -
Aed5g0794 225 SUPERFAMILY beta-beta-alpha zinc fingers 24 52 IPR036236 -
Aed5g0794 225 Pfam C2H2-type zinc finger 78 103 - -
Aed5g0794 225 Pfam C2H2-type zinc finger 26 47 - -
Aed5g0794 225 Gene3D Classic Zinc Finger 24 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0794 Aed-Chr5 5974168 5976040 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0794 1 103 C2H2 Transcription Factor Family AT4G35280 49.138 1.07e-29 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed5g0794 zf-C2H2_6 9.6e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0794 - - gmx:100792631 149.058