Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0793 ATGGTGAGAACCCCATCTTGTGACAAAAGTGGAATGAGGAAAGGTACTTGGACTCCGGAGGAAGATAGAAAGTTAATTGCTTATGTCACTAGATATGGCTGCTGGAATTGGCGCCAACTTCCCAAGTTTGCTGGTCTTGCAAGGTGTGGGAAAAGTTGTAGATTGAGATGGATGAATTATCTAAGGCCAAACGTCAAAAGAGGGAACTTCACTCAAGAAGAAGAAGAATGCATCATCAGAATGCACAAAAAACTTGGTAACAAATGGTCTGTTATTGCGGCTGAGTTACCAGGAAGAACAGATAACGAAATAAAAAACCATTGGCACACCACACTCAATAAGAGGTCTCAACAACACACATTCACAAACGAAGAAACCAGAGCTTCCAAATCAAAGAATAAAGAATCAGTTGCCAACAAGGGTCATGTAACTGTAACTGTTACTGTTCCAGCAACTTCGTTCCAGATTTCAGATAAGTCATCATCATCCCCAGTTTCATCCACCTGCAGCGAGTTTTCCAACATAACTTCAGATAATTTGGTTTTTGAAGATTATAATGACTTGGATTTTCTGAATTATCCATACAATGAAAGTTTCTGGAGAGAGCTAAATCTGGATGAAATAGTTTCAGGATCAGATACTAATGGTAATGGCTCTTTGCAAAGTAGAGATGATGGTAGCCAGATCCATGATTCTTGTGCATTATTGTCTCCGCATGGGTCAACCAGCGAAAGTAATAATAATGTTATGGATGATAATGACTTTCTCGATGCATATGTTGAGGCAACAACGGTTGATAACTTTTGGATAGAACCATATGTGGCTGACATGTTCCACGTTCCAACCGAACATCTTGTCCCCTCCGTGGTAGAATCCGAATATTTTACTCCAATATACGAAGATCTGTGGGGCCAGACTCATCTGTATTAA 930 0.4 MVRTPSCDKSGMRKGTWTPEEDRKLIAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWMNYLRPNVKRGNFTQEEEECIIRMHKKLGNKWSVIAAELPGRTDNEIKNHWHTTLNKRSQQHTFTNEETRASKSKNKESVANKGHVTVTVTVPATSFQISDKSSSSPVSSTCSEFSNITSDNLVFEDYNDLDFLNYPYNESFWRELNLDEIVSGSDTNGNGSLQSRDDGSQIHDSCALLSPHGSTSESNNNVMDDNDFLDAYVEATTVDNFWIEPYVADMFHVPTEHLVPSVVESEYFTPIYEDLWGQTHLY 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0793 309 CDD SANT 69 112 IPR001005 -
Aed5g0793 309 CDD SANT 16 61 IPR001005 -
Aed5g0793 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Aed5g0793 309 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aed5g0793 309 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Aed5g0793 309 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aed5g0793 309 Gene3D - 14 66 - -
Aed5g0793 309 MobiDBLite consensus disorder prediction 116 138 - -
Aed5g0793 309 SMART sant 13 63 IPR001005 -
Aed5g0793 309 SMART sant 66 114 IPR001005 -
Aed5g0793 309 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 250 - -
Aed5g0793 309 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 250 - -
Aed5g0793 309 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aed5g0793 309 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aed5g0793 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aed5g0793 309 Gene3D - 68 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0793 Aed-Chr5 5969821 5971817 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0793 1 203 MYB Transcription Factor Family AT2G31180 48.276 2.81e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed5g0793 Myb_DNA-binding 9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0793 K09422 - gmx:100777107 427.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0793 5 5969821 5971817 Aed5g0793 5 5969821 5971817 ECH
Aed1g0878 1 9325327 9327004 Aed5g0793 5 5969821 5971817 PCT