Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0792 ATGGTGAGAACCCCATCTTGTGACAAAAGTGGAATGAGGAAAGGTACTTGGACTCCGGAGGAAGATAGAAAGTTAATTGCTTATGTCACTAGATATGGCTCCTGGAATTGGCGCCAACTTCCCAAGTTTGCAGGTCTTGCAAGGTGTGGGAAAAGTTGTAGATTGAGATGGATGAATTATCTGAGGCCTAACGTCAAAAGAGGAAACTTTACTCAAGAAGAAGAAGAATTCATCATTAGAATGCACAAGAAACTTGGCAACAAATGGTCTTCTATTGCGGCAGAGTTACCTGGAAGAACAGATAATGAAATAAAAAACCATTGGCACACCACACTCCATAAGAGGTCTCAACAAAACATATTCACAAACGAAGAAACCAGAGCCTCCAAATCAAAGAATAAAGGTTCAGTTCCCAACAAGGGTCATGTAACTGTTACTCTTCCAGCAGCAACTTCCCAGATTGCAGATAACTCATCATTATCGCCTCTTTCATCCTCCTGCAGCGAGTTTTCATCCATAACTTGTAATTTTTCCTCTGCTGCCAGTATGGAAAATTTGGTGTTTGAAGATTATAATGACTTGGGTTTTCTGGATTCATACAATGAAAGTTTCTGGAGAGAGCTAAATCTGGATGAAATAGTTTCAGGATCAGATACTAATGGTAATGGCAATGGCAATTTTCAAAGTAGAGATGGTAGCCAGATTCATGATTCTTGTGCAACCAACAAAAGTATTGTTATGGATAATGACTTTCTCGATGCATACGCTGAGGAAACCGTTGATAACTTTTGGACGCAGCCATATGTGGCTGACGTGTCCCATGTTTCAATTCCTTCTGTAGCAGAATCTGAATATTTTTCTCCGATATATGATGACCTGTGGGGTCAATAA 891 0.3996 MVRTPSCDKSGMRKGTWTPEEDRKLIAYVTRYGSWNWRQLPKFAGLARCGKSCRLRWMNYLRPNVKRGNFTQEEEEFIIRMHKKLGNKWSSIAAELPGRTDNEIKNHWHTTLHKRSQQNIFTNEETRASKSKNKGSVPNKGHVTVTLPAATSQIADNSSLSPLSSSCSEFSSITCNFSSAASMENLVFEDYNDLGFLDSYNESFWRELNLDEIVSGSDTNGNGNGNFQSRDGSQIHDSCATNKSIVMDNDFLDAYAEETVDNFWTQPYVADVSHVSIPSVAESEYFSPIYDDLWGQ 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0792 296 CDD SANT 69 112 IPR001005 -
Aed5g0792 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Aed5g0792 296 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aed5g0792 296 CDD SANT 16 61 IPR001005 -
Aed5g0792 296 Gene3D - 6 66 - -
Aed5g0792 296 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aed5g0792 296 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aed5g0792 296 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Aed5g0792 296 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aed5g0792 296 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 266 - -
Aed5g0792 296 SMART sant 13 63 IPR001005 -
Aed5g0792 296 SMART sant 66 114 IPR001005 -
Aed5g0792 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aed5g0792 296 Gene3D - 68 140 - -
Aed5g0792 296 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0792 Aed-Chr5 5962871 5964638 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0792 1 208 MYB Transcription Factor Family AT2G31180 47.115 1.76e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed5g0792 Myb_DNA-binding 7.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0792 K09422 - gmx:778184 433.721