Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0791 ATGGTGAGAACTCCATCTTGTGACAAAAGTGGAATGAGGAAAGGTACTTGGACTGCAGAGGAAGATAGGAAGTTAATTGCTTATGTCACTAGATATGGCTGCTGGAATTGGCGCCAACTTCCCAAGTTTGCTGGTCTTGCAAGGTGTGGGAAAAGTTGTAGATTGAGATGGATGAATTATCTAAGGCCAAACGTCAAAAGAGGGAACTTCACTCAAGAAGAAGAAGAATGCATCATCAGAATGCACAAAAAACTTGGTAACAAATGGTCTGTTATTGCGGCTGAGTTACCAGGAAGAACAGATAACGAAATAAAAAACCAGTGGCACACCACCCTCAAAAAGAGATCTCAACAAAACACGGGCACAAAAGAAGAAACCAGAGCCTCCAAATCAAAGAATAAAGAATCGGTTCCCAACAAGAGTGTAACTGTAACTGTTACTGTTCCAACAACTTCCCAGATTTCAGAGAATTCATCATTATCTCCAGTTTCATCCACCTGCAGCGACTTTTCCAACCTAACTTCAGATCATTCCACTGCTGCCAGCATGGAAAATTTAGTGTTTCAAGATGACAACTTTGGTTTTCTAGATTCATACAATGAAAGTTTCTGGAGAGAACTAAATCTTGATGCCATTTCCTATGATGCACCATGTGAAATAGTGTCAGGAGATACTAATAGTAATAGCAACACCCTTGATTCTCCGCATCAATCAAACAGCGAATGTATTGTTATGGATAATGACTTTCTCGATGCATATGCTGAGGCAACCGTTGATAACTTTTGGACACAGCCATATGTGGCAGCTGACATGTCCCATGTGGTAGAATCTGAATATTATACTCCAATTTATGATGATCTGTGGGGTCATCAAAGTCATTTTTATTAG 888 0.3998 MVRTPSCDKSGMRKGTWTAEEDRKLIAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWMNYLRPNVKRGNFTQEEEECIIRMHKKLGNKWSVIAAELPGRTDNEIKNQWHTTLKKRSQQNTGTKEETRASKSKNKESVPNKSVTVTVTVPTTSQISENSSLSPVSSTCSDFSNLTSDHSTAASMENLVFQDDNFGFLDSYNESFWRELNLDAISYDAPCEIVSGDTNSNSNTLDSPHQSNSECIVMDNDFLDAYAEATVDNFWTQPYVAADMSHVVESEYYTPIYDDLWGHQSHFY 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0791 295 CDD SANT 69 112 IPR001005 -
Aed5g0791 295 SMART sant 66 114 IPR001005 -
Aed5g0791 295 SMART sant 13 63 IPR001005 -
Aed5g0791 295 CDD SANT 16 61 IPR001005 -
Aed5g0791 295 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aed5g0791 295 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 264 - -
Aed5g0791 295 MobiDBLite consensus disorder prediction 103 143 - -
Aed5g0791 295 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Aed5g0791 295 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aed5g0791 295 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aed5g0791 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aed5g0791 295 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aed5g0791 295 MobiDBLite consensus disorder prediction 118 134 - -
Aed5g0791 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Aed5g0791 295 Gene3D - 69 142 - -
Aed5g0791 295 Gene3D - 14 66 - -
Aed5g0791 295 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0791 Aed-Chr5 5958693 5960274 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0791 1 169 MYB Transcription Factor Family AT2G31180 52.071 1.16e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed5g0791 Myb_DNA-binding 3.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0791 K09422 - gmx:100777107 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0791 5 5958693 5960274 Aed1g0878 1 9325327 9327004 PCT