Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0789 ATGGTGAGAACCCCAAGCTGTGACAAAAATGGACTGAAGAAAGGAACATGGACACCAGAGGAAGACAAGAAGTTGGTTGATTACATTACCAGATATGGCCACTGGAATTGGCGACTACTCCCCAAGTTCGCAGGTGAGGGAACTTACCATCAATATAGTTGCCAATGTGATGATCGACTTTCATTTTTTTTGGTTTGGACTATTCCATGTTACTATATTGAGTATTATGAATCCTTAACTAATGTTGTCTTGCGAGATGTGGAAAGAGTTGCAGACTTAGGTGGCTGA 288 0.4132 MVRTPSCDKNGLKKGTWTPEEDKKLVDYITRYGHWNWRLLPKFAGEGTYHQYSCQCDDRLSFFLVWTIPCYYIEYYESLTNVVLRDVERVADLGG 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0789 95 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 45 - -
Aed5g0789 95 SUPERFAMILY Homeodomain-like 11 65 IPR009057 -
Aed5g0789 95 CDD SANT 16 45 IPR001005 -
Aed5g0789 95 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 45 - -
Aed5g0789 95 ProSiteProfiles Myb-like domain profile. 9 64 IPR001005 -
Aed5g0789 95 Pfam Myb-like DNA-binding domain 14 45 IPR001005 -
Aed5g0789 95 Gene3D - 11 62 - -
Aed5g0789 95 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 68 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0789 Aed-Chr5 5951669 5952086 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0789 1 44 MYB Transcription Factor Family AT1G34670 68.182 1.11e-18 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aed5g0789 Myb_DNA-binding 2.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0789 K09422 - gmx:100777621 102.449