Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0788 ATGGTGAGAAGCCCTAATTACAGTGAGAAAAGTGGAGTGAAAAAAGGAACATGGACACCAGAAGAAGATTGGAAGCTGATTGCTTATGTTACTAAACATGGTCACAAGAATTGGCGCCAACTACCCAAGCTTGCAGGTCTTGCGAGGTGTGGAAAGAGCTGCAGATTAAGGTGGATGAATTATTTAAGGTCAGGCATCAAAAGAGGGAACTACACTTATGAAGAAGAGACAATTATCAAACTGCAAGCAAGTCTTGGAAATAGGTGGTCTGTGATTGCTTCTCACTTACCTGGAAGATCAGACAACGAGATAAAAAATCACTGGCATGCCCATCTTAAGAAGAAATTTTCAGTTACAAATCAAATAGTTGAAGCTTCAACAACGCCAACGCAAGTTGCTGCAAGCCCTTTCCAAAACACTTGTCTAGCTACTGATGTGAATTTGGCTATTATTGACTTTGTTGATTTCATGGAGGAAAATACGGATCCTATAAGTGCATACTCTTGGCAAGAACTCTATGAAATTTCGTACTTCTCAGACCAAATTCTAGCACCTTTTGTGGATACTGAACCCCAAAGTTTTTGTCCAGTTTATAATGTTTGA 603 0.3964 MVRSPNYSEKSGVKKGTWTPEEDWKLIAYVTKHGHKNWRQLPKLAGLARCGKSCRLRWMNYLRSGIKRGNYTYEEETIIKLQASLGNRWSVIASHLPGRSDNEIKNHWHAHLKKKFSVTNQIVEASTTPTQVAASPFQNTCLATDVNLAIIDFVDFMEENTDPISAYSWQELYEISYFSDQILAPFVDTEPQSFCPVYNV 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0788 200 Pfam Myb-like DNA-binding domain 74 111 IPR001005 -
Aed5g0788 200 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Aed5g0788 200 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Aed5g0788 200 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Aed5g0788 200 ProSiteProfiles Myb-like domain profile. 63 112 IPR001005 -
Aed5g0788 200 SMART sant 14 64 IPR001005 -
Aed5g0788 200 SMART sant 67 114 IPR001005 -
Aed5g0788 200 Gene3D - 14 67 - -
Aed5g0788 200 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 116 IPR017930 -
Aed5g0788 200 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 141 - -
Aed5g0788 200 CDD SANT 74 112 IPR001005 -
Aed5g0788 200 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Aed5g0788 200 Gene3D - 71 133 - -
Aed5g0788 200 CDD SANT 17 62 IPR001005 -
Aed5g0788 200 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0788 Aed-Chr5 5935259 5936140 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0788 1 182 MYB Transcription Factor Family AT2G31180 50.785 5.35e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed5g0788 Myb_DNA-binding 5.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0788 K09422 - gmx:106799185 297.36