Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0787 ATGGTGAGAACCCCTTATAATTTCTGTGACAAAAGTGGGCTGAAAAAAGGAACATGGGCACCAGAAGAAGACTGGAAGTTGATTGCTCATGTTAATGCACATGGCCACAAGAATTGGCGCCAATTACCCAAGCTTGCAGGTCTTGCGAGGTGTGGAAAGAGCTGTAGATTGAGGTGGATGAATTATTTAAGGCCAGGCATCAAGAGAGGGAACTACACTTATGAAGAAGAAGAGACAATTATCAATCTGCGCGCAAGCCTTGGAAATAGGTGGTCTGTGATTGCTTCTCACTTGCCTGGAAGATCTGACAACGAGATAAAGAACCACTGGCATGCCCATCTTAAGAAGCGATTTCAACAACACGATGAAGCTTCAACGCCAAAGAATCACTCACCAGTTCCATCCATTCATGAAGACAATAAATATTACTCGGTGGAAGCTGATGCAAGCCCTTTCCAAAATCCTGATCATGCTTCTCCATCGTCCCAGAACACATCATTAATGAGCAATTTTTTCTGCGTGATAACTGAACCTGCACCAGCAGCCAGTAGTACTGATGTGAATTTGGTTATTGATGATGGCTTTACTGATTTCATGGAGGAAAACATAGATCCTATAAGTGCATACTCTTGGCAAGAACTCTATGAAATGTCGTACGTCTCAGGCGAATTTCTCGTACCTTTTGTGACAGAATCCGAAAGTTTTTGTCCACTTTATGATGTTTAG 726 0.4256 MVRTPYNFCDKSGLKKGTWAPEEDWKLIAHVNAHGHKNWRQLPKLAGLARCGKSCRLRWMNYLRPGIKRGNYTYEEEETIINLRASLGNRWSVIASHLPGRSDNEIKNHWHAHLKKRFQQHDEASTPKNHSPVPSIHEDNKYYSVEADASPFQNPDHASPSSQNTSLMSNFFCVITEPAPAASSTDVNLVIDDGFTDFMEENIDPISAYSWQELYEMSYVSGEFLVPFVTESESFCPLYDV 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0787 241 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Aed5g0787 241 SMART sant 15 65 IPR001005 -
Aed5g0787 241 SMART sant 68 116 IPR001005 -
Aed5g0787 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 67 IPR017930 -
Aed5g0787 241 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Aed5g0787 241 Pfam Myb-like DNA-binding domain 69 113 IPR001005 -
Aed5g0787 241 Gene3D - 70 141 - -
Aed5g0787 241 Gene3D - 13 69 - -
Aed5g0787 241 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 166 - -
Aed5g0787 241 MobiDBLite consensus disorder prediction 117 137 - -
Aed5g0787 241 CDD SANT 71 114 IPR001005 -
Aed5g0787 241 CDD SANT 18 63 IPR001005 -
Aed5g0787 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 118 IPR017930 -
Aed5g0787 241 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Aed5g0787 241 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 166 - -
Aed5g0787 241 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0787 Aed-Chr5 5930113 5931304 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0787 1 120 MYB Transcription Factor Family AT3G02940 68.333 1.17e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed5g0787 Myb_DNA-binding 1.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0787 K09422 - gmx:106799185 377.481