Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0778 ATGCCTTCTGGGTCGCTGTTACGAAGAACTCGCTCGCCACTGAGGATTGCAACTAGCATGCTAATGTTAGTGAAAGACCAGAGTAAAGGGGATGGATCTAAGTCCCTGGCCGATACACTGGCGAAATGGAAAGAATATAATGCCCGGCTGGAGTCTAACAATGAAGCTGAGAAGCCGGTTAGGAAGGTCCCTGCCAAGGGATCAAAGAAAGGGTGTATGAAAGGAAAAGGAGGGCCTGAGAACTCACGCTGTAACTACAGAGGAGTTAGGCAAAGGACTTGGGGAAAATGGGTTGCTGAAATCCGGGAGCCGAACAGAGGGAGTAGGCTCTGGTTGGGTACTTTTGCCACAGCCATTAGTGCTGCTCTGGCTTATGATGAAGCAGCAAGGGCAATGTATGGTTCTTGTGCACGCCTCAACTTTCCCAATGTTCAAGTGTCTACTTTATCTGAGGAATCGTCAAGAAATTCTCCACCTTCTAATAAGAAGTCAAGAAATTCTTCGGCTGCTAATGAATCTGGTCCTGCGTTGATGATATTAGAGAGTTCCGAGTGCATGATGTTGCCGAACAACTCTGGTGGAGACGCAGCAGAGGATGATGACATGGAAGACCTTTCCTTATCCTTAGGTGTGAAATGTGTGAAACGTGAGGAAGGGGAGGATGAATCAGGGACCAGTTCTTCCTATCTTTCATTGTCTTGA 702 0.4744 MPSGSLLRRTRSPLRIATSMLMLVKDQSKGDGSKSLADTLAKWKEYNARLESNNEAEKPVRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFATAISAALAYDEAARAMYGSCARLNFPNVQVSTLSEESSRNSPPSNKKSRNSSAANESGPALMILESSECMMLPNNSGGDAAEDDDMEDLSLSLGVKCVKREEGEDESGTSSSYLSLS 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0778 233 SMART rav1_2 85 148 IPR001471 GO:0003700|GO:0006355
Aed5g0778 233 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 25 229 - -
Aed5g0778 233 MobiDBLite consensus disorder prediction 149 173 - -
Aed5g0778 233 MobiDBLite consensus disorder prediction 208 233 - -
Aed5g0778 233 CDD AP2 84 144 IPR001471 GO:0003700|GO:0006355
Aed5g0778 233 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 25 229 - -
Aed5g0778 233 SUPERFAMILY DNA-binding domain 85 142 IPR016177 GO:0003677
Aed5g0778 233 MobiDBLite consensus disorder prediction 149 174 - -
Aed5g0778 233 MobiDBLite consensus disorder prediction 52 84 - -
Aed5g0778 233 Pfam AP2 domain 84 134 IPR001471 GO:0003700|GO:0006355
Aed5g0778 233 Gene3D AP2/ERF domain 85 144 IPR036955 GO:0003700|GO:0006355
Aed5g0778 233 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700|GO:0006355
Aed5g0778 233 PRINTS Ethylene responsive element binding protein signature 108 124 IPR001471 GO:0003700|GO:0006355
Aed5g0778 233 ProSiteProfiles AP2/ERF domain profile. 85 142 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0778 Aed-Chr5 5847380 5849039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0778 23 142 AP2-EREBP Transcription Factor Family AT2G40350 58.871 2.43e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed5g0778 AP2 2.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0778 - K09286 gmx:100783729 319.701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0895 1 9455952 9457808 Aed5g0778 5 5847380 5849039 PCT