Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0751 ATGCAAGCCGGTATTATGATTCCGGCGAGAAACATGCCTTCGATGATAGCTAGGAACAACAACGTTGGTGGATTTGGATCATCTTCTCCTTTCACTCTTGCCCAGCCGAACCTGATGGACGCGTTGGAGATGGGTCAGAACACTTCGGAGAGTGAGGTTCCTCGAATCCGGGAAGATGAGTTCGACAGTGCCACAAAGTCCGGTAGTGAAAACCAAGAAGGTGCCTCTGGTGATGACCAAGACCCTCGTCCCAACAAAAAGAAACGTTACCATCGCCACACCCAACACCAGATCCAGGAAATGGAAGCTTTCTTCAAGGAGTGTCCACACCCAGATGACAAACAAAGGAAGGAACTGAGCAGGGAGTTAGCTTTAGAGCCATTGCAGGTTAAGTTTTGGTTTCAGAACAAGCGTACTCAGATGAAGACACAACACGAGCGACATGAAAATACGCAGCTTAGAACCGAAAACGAGAAGCTTCGAGCAGATAACATGAGGTATAGAGAGGCTCTTAGCAATGCTTCGTGTCCTAATTGTGGTGGACCAACCGCTATAGGAGAAATGTCATTCGATGAACATCACTTGAGGCTTGAAAACGCAAGGCTAAGAGAAGAGATTGATCGGATTTCAGCAATTGCTGCAAAGTATGTAGGGAAGCCAGTGGTGAACTATTCAAACATTTCTCCTTCTCTGCCTCCACGACCACTGGAACTTGGGGTTGGTGCTGGATTTGGAGGCCAACCAGGGATTGGTGTGGACATGTATGGAGCTGGTGATCTTCTTAGGTCAATTAGTGGGCCCACTGAAGCTGATAAGCCAGTGATCATAGAGCTAGCTGTTGCAGCCATGGAGGAGCTCATTGGGATGGCTCAATTGGGTGAGCCACTTTGGTTAACTACCCTTGATGGCTCTTCCACTATGCTCAATGAGGATGAGTACGTTAGGTCCTTCCCAAGAGGGATTGGTCCAAAACCTTCTGGCTTCAAATGTGAAGCTTCTAGAGAAACTGCTGTTGTTATCATGAACCATGTCAACCTCGTTGAGATTCTCATGGATGTGAACCAATGGTCCACAGTTTTCTCTGGCATAGTCTCAAGAGCCATGACTCTAGAAGTGCTATCAACAGGGGTGGCCGGGAACTACAATGGTGCCTTACAAGTGATGACAGCAGAGCTACAACTACCTACACCACTTGTGCCAACTCGCGAGAGTTATTTTGTAAGGTATTGCAAGCAACATGCCGATGGAACTTGGGCTGTTGTGGATGTTTCTTTGGATAATTTGCGCCCAAGTCCTTCTGCCAGAAGCAGAAGAAGGCCTTCTGGTTGCTTAATTCAAGAAATGCCAAATGGCTATTCAAAGGTAAGGTTTTGCACATGTTCTTTGACTTTTATTATTATTATTATTATTATTATTATTATTATTATTCAAATTAAGGTAAGGTTGTTGAACTTGTGTGACCGGTTACATTAA 1473 0.4549 MQAGIMIPARNMPSMIARNNNVGGFGSSSPFTLAQPNLMDALEMGQNTSESEVPRIREDEFDSATKSGSENQEGASGDDQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELALEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYSNISPSLPPRPLELGVGAGFGGQPGIGVDMYGAGDLLRSISGPTEADKPVIIELAVAAMEELIGMAQLGEPLWLTTLDGSSTMLNEDEYVRSFPRGIGPKPSGFKCEASRETAVVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQLPTPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRPSPSARSRRRPSGCLIQEMPNGYSKVRFCTCSLTFIIIIIIIIIIIIQIKVRLLNLCDRLH 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0751 490 SMART HOX_1 85 148 IPR001356 GO:0003677
Aed5g0751 490 CDD homeodomain 87 145 IPR001356 GO:0003677
Aed5g0751 490 ProSiteProfiles 'Homeobox' domain profile. 84 144 IPR001356 GO:0003677
Aed5g0751 490 Gene3D - 322 463 IPR023393 -
Aed5g0751 490 Coils Coil 150 170 - -
Aed5g0751 490 CDD START_ArGLABRA2_like 272 455 - -
Aed5g0751 490 ProSitePatterns 'Homeobox' domain signature. 119 142 IPR017970 GO:0000981|GO:0006355
Aed5g0751 490 MobiDBLite consensus disorder prediction 36 96 - -
Aed5g0751 490 Pfam Homeodomain 87 142 IPR001356 GO:0003677
Aed5g0751 490 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 41 457 - -
Aed5g0751 490 Pfam START domain 278 455 IPR002913 GO:0008289
Aed5g0751 490 MobiDBLite consensus disorder prediction 52 66 - -
Aed5g0751 490 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 41 457 IPR042160 -
Aed5g0751 490 MobiDBLite consensus disorder prediction 36 51 - -
Aed5g0751 490 SMART START_1 277 488 IPR002913 GO:0008289
Aed5g0751 490 SUPERFAMILY Bet v1-like 268 461 - -
Aed5g0751 490 Gene3D - 72 161 - -
Aed5g0751 490 ProSiteProfiles START domain profile. 268 455 IPR002913 GO:0008289
Aed5g0751 490 SUPERFAMILY Homeodomain-like 76 144 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0751 Aed-Chr5 5614370 5620988 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0751 33 457 Homeobox Transcription Factor Family AT4G04890 70.709 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aed5g0751 START 9.3e-41 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0751 K09338 - gmx:100782260 874.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0751 5 5614370 5620988 Aed5g0751 5 5614370 5620988 ECH
Aed1g0929 1 9666754 9673658 Aed5g0751 5 5614370 5620988 PCT