Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0747 ATGGTTATGGGGAGAAGGAGAACACTATTCCTCTTGGTTTTGTGCTTGTGGATGATTCCCTTGGAAGTGTTAGGGAGGAAAGAACCCTTTTTTTCACCTTCCAGTGTGAATTCCACTGTTTCTTTTAGACCAAAGGTTGTGAAGTTTGGTGCCCTCTTTACTATGGATTCTATCATTGGAAAATCAGCTTTACCTGCAATTATGGCTGCTGTTAAGGATGTTAACTCTAGCACAAGCATTCTCCCTGGCATTGATCTGCAAGTTATTGTACATGATACAAATTGCAGTGCTTTTCTTGGAACAATGGAAGCTCATGTGATATCTCATGTTGTTAATGAACTCCATGTGCCTCTTCTATCGTTTGGGGCAACAGATCCAACTCTCTCTGCTCTACAATACCCCTATTTTGTCCGCACTACTCAGAACGACTATTTTCAGATGTATGCAATTGCAGACTTTGTTGATTTCCACAGATGGAAGAAGGTGATTGCCATTTATGTAGATGATGACAATGGAAGGAATGGAATCTCTGTGTTGGGTGATGCAATGTCAAAGAAACGTGCCAAGATCTCTTACAAGGCTGCATTCCCTCCCGGGGCAACGGAGAGTGAAATCAGTGACCTTTTAAACGAGGTGAACTTGATGGAATCGCGGGTCTATGTTCTTCATGTGAATCCTGATAGAGGTTTGAGAATCTTCTCTCTGGCCAAGAGGCTTAGAATGATGGACAGTGGCTATGTTTGGATTGCAACAGATTGGCTTCCTTCAGTGCTGGACTCATTGGATTCACCAGACACTCACACTATGGATCTCTTGCAAGGCGTTGTTGCGTTTCGCCATCACATTCCTGAGACTGATCTCAAGAAGAGTTTTCTCTCCAGGCTGAAGAGGCAGAGGGAGAATGAGACTGTGAGTTTCAATTCTTATGCACTCTATGCTTATGATTCTGTTTGGTTAGCGGCTCGCGCCCTTGATGCTTATCTCAATGAAGGTGGCAATTTATCTTTCTCCAGTGATCCTAAGTTGCATGACACAAATGGAAGCATGCTGCAGTTGGCATCACTCCGTACCTTCGATGGTGGCCCTCAGTTTTTGCAGACAATTTTGAAAACGAACTTCACTGGTCTCAGTGGTCAAGTTGAGTTTGACACGGAGAAGAATTTGGTTCATCCAGCCTATGATATTCTGAACATTGGTGGCAGTGGATCACGTAGAATTGGTTATTGGTCTAACCACTCTGGCCTCTCAGTTATAGCTCCTGAGATTTTATATGAGAAAAAATCATCCAACACTTCTTTTAAGAGCAATAAAGAACTGTACAGTGTGATATGGCCTGGAGAGGCTACAGTTACACCAAGGGGATGGGTGTTTCCCAACAATGGACAGCCACTGAGGATCGCGGTGCCAAACCGAGTGAGCTTCAAGGATTTTGTCTCTAAAGACAAGAACCCTCCAGGGGCACAAGGCTATTGCATTGATGTCTTTGAAGAAGCCTTAAAATTGTTGCCTTATCCTGTCCCACGGCAATATATACTATATGGAAATGGTGAAAGGAATCCTAGCTACAACGACCTTGTGGAGCAAGTTGCACAGAATAACTTTGATGCAGTTGTTGGAGATGTCACAATTGTCACAAATAGGACAAGGATTGTGGATTTCACTCAACCTTTCATGCCATCAGGGCTTGTTGTTGTGGTTCCTGTGGAGGAGAAGAAGTCAAGCCCTTGGTCTTTCCTTGAGCCATTCACTGCTCAAATGTGGTTGGTCACTGGTGCTTTCTTTCTTTTCGTGGGAACTGTTGTGTGGATTCTTGAGCACCGGCTCAATCCCGAGTTCCGCGGTTCTCCAAGGAAACAACTCATAACAGTGTTTTGGTTAGTATGTTTTCCTCATTTTAAAGCCTTTTTATCTCGAACATGGTACCAAGGGATTTATAATACTCACACACATGTTTAA 1956 0.4346 MVMGRRRTLFLLVLCLWMIPLEVLGRKEPFFSPSSVNSTVSFRPKVVKFGALFTMDSIIGKSALPAIMAAVKDVNSSTSILPGIDLQVIVHDTNCSAFLGTMEAHVISHVVNELHVPLLSFGATDPTLSALQYPYFVRTTQNDYFQMYAIADFVDFHRWKKVIAIYVDDDNGRNGISVLGDAMSKKRAKISYKAAFPPGATESEISDLLNEVNLMESRVYVLHVNPDRGLRIFSLAKRLRMMDSGYVWIATDWLPSVLDSLDSPDTHTMDLLQGVVAFRHHIPETDLKKSFLSRLKRQRENETVSFNSYALYAYDSVWLAARALDAYLNEGGNLSFSSDPKLHDTNGSMLQLASLRTFDGGPQFLQTILKTNFTGLSGQVEFDTEKNLVHPAYDILNIGGSGSRRIGYWSNHSGLSVIAPEILYEKKSSNTSFKSNKELYSVIWPGEATVTPRGWVFPNNGQPLRIAVPNRVSFKDFVSKDKNPPGAQGYCIDVFEEALKLLPYPVPRQYILYGNGERNPSYNDLVEQVAQNNFDAVVGDVTIVTNRTRIVDFTQPFMPSGLVVVVPVEEKKSSPWSFLEPFTAQMWLVTGAFFLFVGTVVWILEHRLNPEFRGSPRKQLITVFWLVCFPHFKAFLSRTWYQGIYNTHTHV 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0747 651 Gene3D - 459 574 - -
Aed5g0747 651 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 38 632 - -
Aed5g0747 651 SMART GluR_14 465 643 IPR001320 GO:0015276|GO:0016020
Aed5g0747 651 Gene3D - 66 390 - -
Aed5g0747 651 CDD PBP1_GABAb_receptor_plant 48 417 IPR044440 -
Aed5g0747 651 Gene3D - 142 415 - -
Aed5g0747 651 PANTHER GLUTAMATE RECEPTOR 3.4 38 632 - -
Aed5g0747 651 Gene3D - 575 636 - -
Aed5g0747 651 SUPERFAMILY Periplasmic binding protein-like II 440 592 - -
Aed5g0747 651 Pfam Ligated ion channel L-glutamate- and glycine-binding site 482 567 IPR019594 GO:0004970|GO:0016020
Aed5g0747 651 Pfam Receptor family ligand binding region 102 399 IPR001828 -
Aed5g0747 651 SUPERFAMILY Periplasmic binding protein-like I 43 456 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0747 Aed-Chr5 5580549 5586204 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0747 7 626 Ion Channels AT1G05200 60.404 0.0 813
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0747 K05387 - gmx:100802782 1141.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0747 5 5580549 5586204 Aed5g0747 5 5580549 5586204 ECH
Aed1g0931 1 9680275 9689827 Aed5g0747 5 5580549 5586204 PCT
Aed5g0747 5 5580549 5586204 Aed1g0932 1 9693127 9698522 PCT