LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed5g0734	ATGGGGTTGATAAAGGCAACAATAGCAGATGCAACTTTGACATCAATGTGGGTTTTCATCATCTCAACACTGAGGATTGTAACAACAGAGGTAGCACTTTTCCTTGGCCTCGAACCCTTTTCACTAGCAGGACTCATAATCAGCACAATCCTAAACAGCATTTATGTTCTCACCATAAGCTTCATAGGAAGAATCTTAGGTGGTGCAAGCTTCAACCCTTCAACAAATCTCTCATTCCAAACACTAGGGTTGAGGCCTGACTCATCCCTCTCATCAATGGCTCTGAGGTTCCCTGCTCAGGCATGTGGTGGCGCTCTTGGCATCAAAACCCTTCTTTTTGTGATGCCACCTCACTACAAAGACATGCTGAAAGGTCCTTTCTTGAAGGTTGACTTGCACTCCGGTGCTGTTGCTGAAGGGTTGTTGACTTTCACTCACAACATGGCTATCTTCTTTGTGATGTTTAAGGGTCCTAGGAACCCTTTTGTGAAGGTGTATTTGCTTTCTGTGGCCACTGCTGCTTTGGGTATTATGGGCTCGGGCTTCACTGGGCCTTCCATGAACCCTGCTAATGCTTTTGGATGGGCTTTTGTTAACAACAAACACAACACTTGGGAGCAGTTTTATGTCTTTTGGATTTGTCCCTTCATTGGAGCTTCCTCTGCTGCTTTGGTTTTCAGGTCTATGTTTATGCCACCAATCAAGCACAAGATAGCTTGA	720	0.45	MGLIKATIADATLTSMWVFIISTLRIVTTEVALFLGLEPFSLAGLIISTILNSIYVLTISFIGRILGGASFNPSTNLSFQTLGLRPDSSLSSMALRFPAQACGGALGIKTLLFVMPPHYKDMLKGPFLKVDLHSGAVAEGLLTFTHNMAIFFVMFKGPRNPFVKVYLLSVATAALGIMGSGFTGPSMNPANAFGWAFVNNKHNTWEQFYVFWICPFIGASSAALVFRSMFMPPIKHKIA	239

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed5g0734	239	Pfam	Major intrinsic protein	3	226	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Aed5g0734	239	PRINTS	Major intrinsic protein family signature	209	229	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Aed5g0734	239	PRINTS	Major intrinsic protein family signature	52	76	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Aed5g0734	239	PRINTS	Major intrinsic protein family signature	5	24	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Aed5g0734	239	PRINTS	Major intrinsic protein family signature	169	191	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Aed5g0734	239	PANTHER	AQUAPORIN SIP1-1	1	237	IPR044222	GO:0015250
	Aed5g0734	239	Gene3D	Glycerol uptake facilitator protein.	1	237	IPR023271	-
	Aed5g0734	239	PANTHER	MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER	1	237	-	-
	Aed5g0734	239	SUPERFAMILY	Aquaporin-like	3	235	IPR023271	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed5g0734	Aed-Chr5	5467774	5468493	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed5g0734	1	230	Major Intrinsic Protein MIP	AT3G04090	42.609	4.71e-54	172

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed5g0734	K09875		-	gmx:100797126	423.32