Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0726 ATGGAGTGGCATAGAGGCCACACCATAGGCCAAGGCTCATCAGCCACCGTGTCCACCGCCACGTGCCGCGGCGGCGTCTTCGCCGTCAAGTCAACCGAGCTGCATCTATCAGAGCCTCTAAAAAAAGAGCAACAAATTTTATCCTCTCTAAGTAGTCCTTATGTGGTTGCATACAAAGGGTGTGACATCACCATGGAGAACAACAACAAGGTCTTGTTCAACCTCTTCATGGAGTACATGCCCTTCGGCACTCTAGCCCAGAAGACTCGTCAGTGCTGCGGTGGCCGGCTCGATGATCCGGCCATCGCGCATTATACCCGGCAAGTCGTGCAGGGGCTAGAGTACTTGCATTCAAAAGGGCTGGTGCATTGTGACATCAAGGGTGCCAACATCTTAATTGGTGAAGAAGGAGCCAAAATTGGTGACTTGGGGTGTGCCAGGAGCGTGGCGGACCCCACGGCAGCAATCGGCGGCACGCCGATGTTCATGGCGCCGGAGGTGGCGCGTGGGGAGGAGCAAGGGTGTGCTAGTGACATTTGGTCACTTGGGTGCACGGTGGTTGAAATGGCCACTGGTCGTGCACCGTGGCCTAATAATGTGGAAGACCCTTTTTCAGTGCTTTATCATATTGCATATTCTAGTGAAGTGCCTGAGATTCCTTGTTTTCTATCCAATGAAGCAAAGGATTTCTTGGGGAAGTGCTTGAGGAGGAATCCACAAGAGAGGTGGAGAGCCAGTGAGCTATTGAAGCATCCATTTATTGGGAAATTATGTTTCAATAAGGAAGTTTTGGAGTCCAAATCAAGTTCCCCAACTAGTATTCTTGAACAAGGTTTTTGGAGTTCTTTGGAAGAGTCAGAAAATTTAGGCAATTTGATTCACAAAACAGGAAATTTGGCTGCTGGGAGGGTCAGAATATTGGCTCTGTCTTCTGGGGTGCCCTGTTGGGCAAGACATGATGATGATGATGAGAATTGGATCACAGCAAGAGGAGGGAATAGAGTTGAAGATTTTGGCAATTGTTGTGGGACAGGGACAACAACTTCTGCTAGTTCATGGGTTGTCTCACTAGGTGTTGGTGAAAAGCAATGTTAG 1095 0.4922 MEWHRGHTIGQGSSATVSTATCRGGVFAVKSTELHLSEPLKKEQQILSSLSSPYVVAYKGCDITMENNNKVLFNLFMEYMPFGTLAQKTRQCCGGRLDDPAIAHYTRQVVQGLEYLHSKGLVHCDIKGANILIGEEGAKIGDLGCARSVADPTAAIGGTPMFMAPEVARGEEQGCASDIWSLGCTVVEMATGRAPWPNNVEDPFSVLYHIAYSSEVPEIPCFLSNEAKDFLGKCLRRNPQERWRASELLKHPFIGKLCFNKEVLESKSSSPTSILEQGFWSSLEESENLGNLIHKTGNLAAGRVRILALSSGVPCWARHDDDDENWITARGGNRVEDFGNCCGTGTTTSASSWVVSLGVGEKQC 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0726 364 SUPERFAMILY Protein kinase-like (PK-like) 3 283 IPR011009 -
Aed5g0726 364 ProSiteProfiles Protein kinase domain profile. 3 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g0726 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Aed5g0726 364 Gene3D Transferase(Phosphotransferase) domain 1 2 299 - -
Aed5g0726 364 PANTHER MAP KINASE KINASE KINASE 1 334 - -
Aed5g0726 364 CDD STKc_MAPKKK 2 254 - -
Aed5g0726 364 ProSitePatterns Protein kinases ATP-binding region signature. 9 30 IPR017441 GO:0005524
Aed5g0726 364 SMART serkin_6 3 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g0726 364 Pfam Protein kinase domain 4 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g0726 364 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0726 Aed-Chr5 5428965 5430059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0726 1 283 MAP Kinase Kinase Kinase AT2G32510 53.082 3.72e-105 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Aed5g0726 Pkinase 1.4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0726 K20716 - gmx:100794648 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0726 5 5428965 5430059 Aed5g0726 5 5428965 5430059 ECH
Aed5g0726 5 5428965 5430059 Aed9g0703 9 4900592 4902141 ECH
Aed1g0946 1 9814355 9815545 Aed5g0726 5 5428965 5430059 PCT