Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0725 ATGGTTAAAGGTTGTGGACTGATCTCCATGGATTCAGATCCAATTGGGAGCTTCTTCCTCCAAAAGCCAATTGTTGTTCTCAACTCTTTCCCTTCTCAAGACACAACAAACCATAACCACCACAAGTGGAAACAACAGCAACAACTTAGTCCCAACAACAACATGGACATGGACGCCACCAAAGAAGACTGCATCACCAATATCCCCTTCCAAGTCAACCACCTTAGCTGTTCTCCAAACAATAACAATCATGACTCCTCTTCTCCACCACCATCTCACCACAACAGAACCGAGATGGACTTCTTCTCCAACAACAACAACACTGGTTTGAATCTTCTTACTACCAACACTAGCAGCGATGAATCTATGGTGGATGATGAGATATCACCTAATTCAGAAGACAAAAGGGCTAACAATGAGATGGCTTTTGTTCAAGCTGAGCTGGAGAGAATGAAGAGGGAGAATAAAAAGTTGAGGGACACGCTTGATGAGGTTAACACCAATTACAGCGCTCTTCAGATGCATTTCATGAATCTGATGCAGGAGAGGAAGGGCGAGGAGGAAGGTGATGAAGATCAGCAAGAAGAAGAAGTGATCAAGAATAATAAGCAAGGTGGTGATCAGGTATTGGTGCCAAGGCAGTTTATGGATCTTGGGTTGGCTACTGCTAACACTGATGATCAAGATCAACCCTCTTCTTCATCAGGGGTAAGAAGCAGTCAAGGTAGATCAGGATCACCCAACGTAGAAGTGGCTTCAAAGGAATTGTTAGGGACTAATGATCATGAAGGACTAGTAGTTGTGTGTGACCAAGACAAAAAGGAATATGGTAGAGAGGACAGTGATAGTCCCTCAGGTGGTGAGAAAGTTCCAAGGTTCAGTCCTCCAAAGAATAATAATAGTGTTGATCAGGCTCAGGCTGAGGCTACCATGAGAAAGGCAAGAGTTTCTGTTAGAGCTAGATCTGAGGCACCCATGATTACTGATGGGTGTCAATGGAGAAAGTATGGGCAGAAAATGGCGAAAGGAAACCCATGTCCTAGAGCTTATTATAGGTGTACCATGGCTGCTGGTTGCCCAGTTAGAAAACAGGTACAAAGGTGTGCTGAAGATAGAACAGTCCTGATCACAACCTATGAAGGAAACCACAACCACCCTTTGCCTCCAGCAGCTATGGCAATGGCACAAACCACATCCTCAGCAGCAAAAATGCTTCTTTCAGGGTCAATGTCAAGTGCTGACAGCCTAATGAATGCAAACTTCCTCACAAGAACACTCCTTCCATGCTCCTCAAACATGGCCACAATCTCAGCTTCTGCTCCATTCCCAACTGTTACATTGGACCTAACTCAATCTCCAAACCCTCTACAGTTCCCAACAAGGAATCCAAACCAGTTGCAGATTGGTGTCCCTCATCAGATATTTGGACAAGCACTTTACAACCAATCAAAGTTTTCTGGCCTACAAATGTCATCACATGATGCTGCAGACCCTTCTTCACAATTTGGTGGTGCTAACAGCCACTCTCAGCAGCAGCAGGTTCCACCACACCTTGCTGACACGGTTGGTGCTGCCATTGCTACTGACCCCAATTTCACTGCAGCATTGGCAGCAGCTATCACTTCCATTATTGGTGGTGCTCAACAACAACACAACAGTAATAATAGTAGTAACAATAATGGCAACATGACAGTCAGCAACAACAACGGAAAGCAATAA 1719 0.4468 MVKGCGLISMDSDPIGSFFLQKPIVVLNSFPSQDTTNHNHHKWKQQQQLSPNNNMDMDATKEDCITNIPFQVNHLSCSPNNNNHDSSSPPPSHHNRTEMDFFSNNNNTGLNLLTTNTSSDESMVDDEISPNSEDKRANNEMAFVQAELERMKRENKKLRDTLDEVNTNYSALQMHFMNLMQERKGEEEGDEDQQEEEVIKNNKQGGDQVLVPRQFMDLGLATANTDDQDQPSSSSGVRSSQGRSGSPNVEVASKELLGTNDHEGLVVVCDQDKKEYGREDSDSPSGGEKVPRFSPPKNNNSVDQAQAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTVLITTYEGNHNHPLPPAAMAMAQTTSSAAKMLLSGSMSSADSLMNANFLTRTLLPCSSNMATISASAPFPTVTLDLTQSPNPLQFPTRNPNQLQIGVPHQIFGQALYNQSKFSGLQMSSHDAADPSSQFGGANSHSQQQQVPPHLADTVGAAIATDPNFTAALAAAITSIIGGAQQQHNSNNSSNNNGNMTVSNNNGKQ 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0725 572 ProSiteProfiles WRKY domain profile. 322 388 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed5g0725 572 PANTHER OS05G0567200 PROTEIN 61 570 - -
Aed5g0725 572 MobiDBLite consensus disorder prediction 548 572 - -
Aed5g0725 572 MobiDBLite consensus disorder prediction 183 210 - -
Aed5g0725 572 SUPERFAMILY WRKY DNA-binding domain 320 388 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aed5g0725 572 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 61 570 IPR044810 GO:0003700
Aed5g0725 572 SMART WRKY_cls 327 387 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed5g0725 572 Coils Coil 134 175 - -
Aed5g0725 572 MobiDBLite consensus disorder prediction 76 125 - -
Aed5g0725 572 MobiDBLite consensus disorder prediction 272 286 - -
Aed5g0725 572 MobiDBLite consensus disorder prediction 489 516 - -
Aed5g0725 572 MobiDBLite consensus disorder prediction 272 303 - -
Aed5g0725 572 MobiDBLite consensus disorder prediction 76 138 - -
Aed5g0725 572 Pfam WRKY DNA -binding domain 329 386 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed5g0725 572 Gene3D WRKY domain 312 389 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aed5g0725 572 MobiDBLite consensus disorder prediction 223 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0725 Aed-Chr5 5415831 5418497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0725 107 558 WRKY Transcription Factor Family AT1G62300 51.883 5.93e-126 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Aed5g0725 WRKY 4.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0725 - - gmx:100797998 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0725 5 5415831 5418497 Aed5g0725 5 5415831 5418497 ECH
Aed5g0725 5 5415831 5418497 Aed9g0705 9 4914499 4917154 ECH
Aed1g0948 1 9823918 9829989 Aed5g0725 5 5415831 5418497 PCT