Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0718 ATGAGTGATATAAGGAAGTGGTTCATGAAAACACATGACAAGGGTAACAATGCTGCTTCCTCCAAGCCTTCCAATCAACCCAAGCCTTCTTCTGATAAACCCCCTTCTGACAAAACGGTGGCTGGAGGTCAGGAAAGTTCAGGGAGGAGGATAACTAGCAAATATTTCAATTCGAACAAGCAAAAGGGGAAAGATGAGAAAGAAACCCAGGAACTCCCTGCTAAAAGAAAGATTATGAAGGACAGTGAGGAAATACTGGAGCCAAAGAAAGTTCATAAAGATGATGGAGATGACTCTGTATTGCCCACTAATAAAAAGAAGTTAGCTGACACCACTTCAACAAAAAAATTGAAGAGTGGATCAGGTAGGGGGATTCCCAAGAAATCTGTAGTTTTGGAAGAAAGTGATGAAGATGATGACAAAGATGCTGTGTCTGCTGCTAAATCTGCTGGAAGGGGTAGTGGTGGAAGAGGAGCACCAGGGCGATCAACTGGTGGGAGAGGTAGAGGGGGTGGTAGGGGTGGATTCATGAATTTTGGAGAAAGAAAAGATCCTCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTCCTGACTGTTTAGCTGGCTTGACTTTTGTGATCAGTGGAACACTGGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCATGGTGGTCGTGTCACTGGATCAGTCAGCAAGAAAACAAATTATCTGTTATGTGATGAAGATATTGGGGGGCGGAAGTCTGAAAAAGCCAAAGAGCTAGGAACTTCCTTCCTCACAGAGGATGGGCTGTTTGATAAGATTCATGCCTCAAAACCTGCAAAAGCTCCTTCACAAGAAGACAAGAAACCTGTCAATAAGGCTGTTGCTGTAGCATCATCACAGCCAAAAGTTTCTCCAAAATCACAAGTTAAGGTCCCTCCTCTGTCTTCACGCTCACCTTCTAAGCAAGCCAAGCTGATGACTGCTACTGTTCAGTCTTCTTTGATGTGGACAGAGAAATATCGACCTAAAGATCCAAAGGATATCATAGGGAATCAGTCACTTGTTTTACAGCTTCGTAATTGGTTGAAAGCTTGGAATGAGCAATTTTTGGACACTGGTAACATAAAAAAGGGAAAGAAGCAAAATGACTCTAGCTTGAAAAAAGCTGTCTTGTTAAGTGGAACCCCTGGTATAGGAAAAACAACTTCAGCAAAGTTGGTCTGTCAGGAGCTTGGTTTCCAAGCCATAGAGGTAAATGCTAGTGATAGCCGTGGAAAAGCTGATAGCAAAATTGAAAAAGGAATTAGTGGAAGCAAGACAAATTCTGTTAAGGAACTTGTAACCAATGAGGCCATTGGTGTTAATATGGAACGGTTGGTCTCTCATCACAATATGCCAAAGCATTCCAAATCTGTGCTCATTATGGATGAGGTTGATGGGATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTAATTGCTAGCATCAAGATATCAAAAATTCCTATTATCTGCATTTGCAATGACCGTTACAGCCAGAAACTAAAAAGCCTTGTGAACTACTGTTTGCTTCTAAGTTTTCGGAAACCTACAAAGCAACAGATGGCAAAGAGGTTGATGGATGTTGCAAAGGCTGAAAGGCTTCAAGTTAATGAGATTGCACTTGAGGAACTAGCAGAAAGAGTTAATGGAGATATGAGAATGGCACTAAACCAGTTACAGTATATGAGCCTCTCTATGTCAGTTATCAACTATGATGATATTAGGCAGCGCTTTCTTACCAATGCGAAAGATGAAGACATTTCACCATTCACAGCTGTTGATAAGCTTTTTGGTTTTAATGCTGGGAAGTTGAAAATGGATGAGAGGATAAATCTTAGCATGAGTGATCCTGATCTTGTTCCTCTTATTGTCCAGGAAAATTATATTAATTATAGACCAAGCTTGGCTGGTAAGGATGACAATGGCATAAAACGCATGAACCTGATTGCCCGTGCTGCCGAGTCTATTGCTGATGCAGATATAGTGAATGTACAGATTCGCAGATATCGGCAGTGGCAGCTCTCTCAAACTAGTTCTGTTGCAGCATGCATAATTCCTGCATCATTGTTGCACGGGCAAAGGGAAATACTTGAACAGGGAGAACGAAATTTCAACCGGTTTGGTGGGTGGCTGGGGAAGAACTCAACAATGGGAAAAAACTATAGGCTTTTGGATGATCTCCACGTTCACATTCTTGCTTCTCGTGGATCTAGTTCAGGAAGGGTTACCATTCGCATGGAATACCTTAGTCTTCTTCTTAAACAATTGACAGAACCCCTGAGATCCCTGACTAAGGCTGAAGCGGTTCAGCAAGTTGTGGAATTCATGAATACATACTCTCTCAGTCAGGAAGATTTTGATACATTAGTAGAGTTATCAAAATTCAAGGGTTATCCTAATCCACTAGATGGCATACAACCTGCTGTTAAGTCAGCCTTGACAAAAGCATACAAAGAGCAAAGCACATCTCGGGTGGTTCGAGTTGCAGATCTAATCACTCTTCCTGGAGTAAAGAAGGCCCCTAAGAAGCGTATTGCTGCTATTCTTGAACTAGCTGATGAAGGAGGGGAAACAGGTGAAGGTGACACCTTGGACGAGAGTGAAGAAGAGAACAACTCTGATACAGAAGAGCTGGAAGGCACCACCAAGGGTGAGAAGCTGCAATCAGAACTTCAAAGCTTGAATTCAACGGCCACGCAAGTTCAGTTGGAACTGAAGGGAACGGGAAATTCAAGCTCCAAGAAGACATCCGGTGGTAGAGGTAAAGGTGCTTCTGCATCATCTGGGAAGAAGGTTGCTCAAGCTCCAAAGACTATTGCAAAAAGAAAAAGGTGA 2877 0.4265 MSDIRKWFMKTHDKGNNAASSKPSNQPKPSSDKPPSDKTVAGGQESSGRRITSKYFNSNKQKGKDEKETQELPAKRKIMKDSEEILEPKKVHKDDGDDSVLPTNKKKLADTTSTKKLKSGSGRGIPKKSVVLEESDEDDDKDAVSAAKSAGRGSGGRGAPGRSTGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSEKAKELGTSFLTEDGLFDKIHASKPAKAPSQEDKKPVNKAVAVASSQPKVSPKSQVKVPPLSSRSPSKQAKLMTATVQSSLMWTEKYRPKDPKDIIGNQSLVLQLRNWLKAWNEQFLDTGNIKKGKKQNDSSLKKAVLLSGTPGIGKTTSAKLVCQELGFQAIEVNASDSRGKADSKIEKGISGSKTNSVKELVTNEAIGVNMERLVSHHNMPKHSKSVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLMDVAKAERLQVNEIALEELAERVNGDMRMALNQLQYMSLSMSVINYDDIRQRFLTNAKDEDISPFTAVDKLFGFNAGKLKMDERINLSMSDPDLVPLIVQENYINYRPSLAGKDDNGIKRMNLIARAAESIADADIVNVQIRRYRQWQLSQTSSVAACIIPASLLHGQREILEQGERNFNRFGGWLGKNSTMGKNYRLLDDLHVHILASRGSSSGRVTIRMEYLSLLLKQLTEPLRSLTKAEAVQQVVEFMNTYSLSQEDFDTLVELSKFKGYPNPLDGIQPAVKSALTKAYKEQSTSRVVRVADLITLPGVKKAPKKRIAAILELADEGGETGEGDTLDESEEENNSDTEELEGTTKGEKLQSELQSLNSTATQVQLELKGTGNSSSKKTSGGRGKGASASSGKKVAQAPKTIAKRKR 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0718 958 SUPERFAMILY BRCT domain 196 277 IPR036420 -
Aed5g0718 958 MobiDBLite consensus disorder prediction 865 958 - -
Aed5g0718 958 CDD HLD_clamp_RFC 530 588 - -
Aed5g0718 958 CDD BRCT_RFC1 196 274 - -
Aed5g0718 958 MobiDBLite consensus disorder prediction 297 322 - -
Aed5g0718 958 Gene3D - 530 600 - -
Aed5g0718 958 MobiDBLite consensus disorder prediction 869 889 - -
Aed5g0718 958 PANTHER REPLICATION FACTOR C SUBUNIT 1 10 929 - -
Aed5g0718 958 MobiDBLite consensus disorder prediction 180 195 - -
Aed5g0718 958 MobiDBLite consensus disorder prediction 40 58 - -
Aed5g0718 958 Pfam ATPase family associated with various cellular activities (AAA) 390 496 IPR003959 GO:0005524|GO:0016887
Aed5g0718 958 Gene3D - 602 711 - -
Aed5g0718 958 SUPERFAMILY post-AAA+ oligomerization domain-like 601 746 IPR008921 GO:0003677|GO:0006260
Aed5g0718 958 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 334 590 IPR027417 -
Aed5g0718 958 PIRSF RFC1 2 932 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Aed5g0718 958 Coils Coil 898 918 - -
Aed5g0718 958 MobiDBLite consensus disorder prediction 1 197 - -
Aed5g0718 958 Gene3D BRCT domain 173 275 IPR036420 -
Aed5g0718 958 MobiDBLite consensus disorder prediction 899 937 - -
Aed5g0718 958 CDD AAA 387 493 - -
Aed5g0718 958 MobiDBLite consensus disorder prediction 277 322 - -
Aed5g0718 958 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 10 929 - -
Aed5g0718 958 SMART AAA_5 386 531 IPR003593 -
Aed5g0718 958 Gene3D - 334 529 IPR027417 -
Aed5g0718 958 Pfam BRCA1 C Terminus (BRCT) domain 198 271 IPR001357 -
Aed5g0718 958 SMART BRCT_7 198 276 IPR001357 -
Aed5g0718 958 MobiDBLite consensus disorder prediction 14 33 - -
Aed5g0718 958 ProSiteProfiles BRCT domain profile. 196 277 IPR001357 -
Aed5g0718 958 MobiDBLite consensus disorder prediction 59 113 - -
Aed5g0718 958 Pfam Replication factor RFC1 C terminal domain 670 832 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0718 1 910 Core DNA Replication Machinery Family AT5G22010 67.462 0.0 1103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0718 K10754 - gmx:100790070 1527.69