Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0716 ATGTCAATGGAAATGATGGCAACCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAGTGTTCCATACAGCAGTTTGCTAACCATAGTTACGGTTAGGTGTGGACATTGTGCCAATTTGCTATCAGTTAACATGGGAGCGTCACTTCAAGCATTTCCCCCTCAAGACCCTCAGAAACAGCACCTAAGCTTTGAAGAACCAAGCAGCAAGGAACTGGGATCGTCTTCAAAATGTAACAAAATAGCGGCATTTGAGACAGTAGAGCATGAACAACCTAGGATCCCTCCCATTCGTCCTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAAGGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCAGCAGCCAAAAACTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGAACTTAAAGCTGGATGGCAAAGAAAAGTTGGACCAGCAGGGGGAAGGAGCTGAAAAGTCTAATGGAGGATTCTACTGA 552 0.4438 MSMEMMATERVCYVHCNFCNTILAVSVPYSSLLTIVTVRCGHCANLLSVNMGASLQAFPPQDPQKQHLSFEEPSSKELGSSSKCNKIAAFETVEHEQPRIPPIRPTEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFGLKNLKLDGKEKLDQQGEGAEKSNGGFY 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0716 183 PANTHER PLANT-SPECIFIC TRANSCRIPTION FACTOR YABBY FAMILY PROTEIN 1 183 - -
Aed5g0716 183 PANTHER PROTEIN YABBY 6-RELATED 1 183 IPR006780 GO:0007275
Aed5g0716 183 SUPERFAMILY HMG-box 102 150 IPR036910 -
Aed5g0716 183 Gene3D High mobility group box domain 99 178 IPR036910 -
Aed5g0716 183 Pfam YABBY protein 7 157 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0716 Aed-Chr5 5323279 5333441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0716 1 182 C2C2-YABBY Transcription Factor Family AT1G08465 62.827 1.15e-74 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Aed5g0716 YABBY 9.7e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0716 K25796 - gmx:100500091 349.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0963 1 9933813 9943914 Aed5g0716 5 5323279 5333441 PCT