Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0713 ATGTTTGGGAGGGCACCGAAGAAGAGCGATAGTACGAGGTACTACGAAATCCTCGGCGTCTCTAAGAACGCTTCGCCGGATGATCTGAAGAAGGCTTACAAAAAAGCCGCCATTAAGAACCACCCCGACAAGGGCGGTGATCCCGAGAAGTTTAAAGAGCTGGCTCAAGCTTATGAAGTTCTAAGTGACCCTGAGAAGCGTGAGATATATGATCAGTACGGTGAAGATGCGCTTAAGGAAGGAATGGGCGGTGGCGGTGGCCATGATCCGTTTGATATATTTTCATCTTTCTTTGGTGGTGGGAGTCCGTTTGGATCAGGTGGAAGTAGCCGTGGTAGGAGGCAGAGACGCGGAGAAGATGTGGTTCACCCTCTCAAGCCAGACACAACTACAGGAGATATTGTCTTTGTTCTTCAGCAGAAGGAACATCCCAAATTCAAGAGAAAGGCTGAAGACCTTTTTGTGGAGCACACCTTGTCCCTTACTGAGGCCTTATGTGGCTTCCAATTTGTGCTGACTCACTTGGATGGCCGTCAGCTTCTTATTAAATCAAATCCCGGCGAAGTTGTCAAGCCTGATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCATTCATGAAGGGAAAACTTTACATCCACTTCACTGTGGAGTTCCCAGATTCTCTAAATCCTGATCAGGTTCAGGCCTTGGAGGCTGTTCTGCCAGCAAAGCCTTCTTCAAACTTGACAGACATGGAGCTTGATGAATGTGAGGAGACAACACTCCATGATGTCAACATGGAGGAGGAGACTAGGAGGAAGCAGCAACAAGCTCAGGAGGCATATGACGAGGATGATGACATGCCTGGTGGTGCACAGAGGGTACAGTGTGCCCAGCAGTAA 897 0.4838 MFGRAPKKSDSTRYYEILGVSKNASPDDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGHDPFDIFSSFFGGGSPFGSGGSSRGRRQRRGEDVVHPLKPDTTTGDIVFVLQQKEHPKFKRKAEDLFVEHTLSLTEALCGFQFVLTHLDGRQLLIKSNPGEVVKPDSYKAINDEGMPMYQRSFMKGKLYIHFTVEFPDSLNPDQVQALEAVLPAKPSSNLTDMELDECEETTLHDVNMEEETRRKQQQAQEAYDEDDDMPGGAQRVQCAQQ 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0713 298 CDD DnaJ 14 63 IPR001623 -
Aed5g0713 298 Gene3D DnaJ domain 10 110 IPR036869 -
Aed5g0713 298 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Aed5g0713 298 MobiDBLite consensus disorder prediction 259 298 - -
Aed5g0713 298 SUPERFAMILY Chaperone J-domain 8 109 IPR036869 -
Aed5g0713 298 PRINTS DnaJ domain signature 66 85 IPR001623 -
Aed5g0713 298 PRINTS DnaJ domain signature 15 33 IPR001623 -
Aed5g0713 298 PRINTS DnaJ domain signature 46 66 IPR001623 -
Aed5g0713 298 SUPERFAMILY HSP40/DnaJ peptide-binding domain 146 235 IPR008971 GO:0006457|GO:0051082
Aed5g0713 298 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 7 126 IPR044713 GO:0006457|GO:0030544
Aed5g0713 298 MobiDBLite consensus disorder prediction 105 125 - -
Aed5g0713 298 PANTHER CHAPERONE PROTEIN DNAJ 2-RELATED 127 298 - -
Aed5g0713 298 CDD DnaJ_C 123 227 - -
Aed5g0713 298 Pfam DnaJ C terminal domain 129 224 IPR002939 -
Aed5g0713 298 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Aed5g0713 298 SMART dnaj_3 12 66 IPR001623 -
Aed5g0713 298 MobiDBLite consensus disorder prediction 259 279 - -
Aed5g0713 298 Pfam DnaJ domain 14 71 IPR001623 -
Aed5g0713 298 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 127 298 IPR044713 GO:0006457|GO:0030544
Aed5g0713 298 PANTHER CHAPERONE PROTEIN DNAJ 2-RELATED 7 126 - -
Aed5g0713 298 Gene3D - 143 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0713 Aed-Chr5 5301800 5304538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0713 5 73 C2H2 Transcription Factor Family AT1G74250 41.026 2.12e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0713 K09503 - gmx:100808604 335.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0967 1 9970894 9973170 Aed5g0713 5 5301800 5304538 PCT