Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0707 ATGGAAGAAATAGAGGTTCCTACCCTTTTCCTCTGCCCAATTTCTCTGCAGCTTATGAGTGACCCTGTGACAGTGTGCACAGGAATCACATACAATAGAGAAAACATAGAAAAATGGTTATTCTCATGCAAGAATACCAAAACCTGCCCTGTCACAAGACAACAGCTTTCACACACAGATCTTACTCCAAACCACACTCTCCAACGTTTGATCCAAGCTTGGTGCACCAACAATGCTTGGTTTGGCATTGAAACCATTTCATCTCCAAACCCAACAACCATTGACCAAACTGAAATAGTGAAACTCCTCTTAGAAGCAAAGAACTTCCCTGAAAAACAGCTCAAGTGTGTTAGAAAACTTCAATCCATTGCCTTGGAAAGTGAAAGTAACAAAATGTTTTTGGAGTCTGCAGGGGTGTTAGATTTCTTGGCTTCAAGTGTTATGAGTGAAGCAGCTATAGAACTCTTGTTCCATCTAAACCCTTCTGAATCTCACCTTAAAAACGTGATGAACAGTGAGGGGAATCAGTTTATTGAGTCATTGCTTCATGTCTTGAAGCATGGGAAGTGCCAAACTAGAGCCTATGCAACAGTGCTATTGAAGTCAGCATTTGAGGTGGCAGGTCCAACCCAATTGAACAATGTCAAATCAGAGTTATTTGTGGAGATAATCAGAGTGTTGAAGGATCAAATTTCACAAGAGGCTTCCAAGGCAGCGTTGAAGCTTCTTGTGGAGTTGTGTTCATGGGGAAGGAACAGGATCAAAGCAGTTGAATGTGGTGGAGTTCTAGTCCTCATTGACCTGCTTCTTGTTCTTGATCATGTGTCTCAAAGGAGAGCATGTGAACTCATGCTGGTTGCATTGGACAGGCTGTGTGGCTGTGCTGAAGGAAGAGCTGAATTGGTGAACCATGGAGCTGGAGTGGCTGTTGTGGCCAAGAAAATTCTGAGGGTTTCTCATGCTGCAAGTGATAAAGGGGTCAAAATCTTGTTCTCCATTTGTAGAAACTCTGCCACACCTAGAGTCCTTAATGAAATGTTGCTGTTTGGTGCTGTGTCTAAGCTCTGTTTGGTGCTTCAAATGGAGGGTAACTCCAAGGCCAAGGAGAGGGCAAGGGAGACACTCAAATTGCACTCGATGCGTTCAAGCCATGAGTGTGTAATAGTCTCAGAAAAAAGGCCGAGATGGATTTTGGTTGGTAGTGCTGAGCTTTTTGCTGAACAAGATGCTTTCAATGTTTGA 1242 0.4324 MEEIEVPTLFLCPISLQLMSDPVTVCTGITYNRENIEKWLFSCKNTKTCPVTRQQLSHTDLTPNHTLQRLIQAWCTNNAWFGIETISSPNPTTIDQTEIVKLLLEAKNFPEKQLKCVRKLQSIALESESNKMFLESAGVLDFLASSVMSEAAIELLFHLNPSESHLKNVMNSEGNQFIESLLHVLKHGKCQTRAYATVLLKSAFEVAGPTQLNNVKSELFVEIIRVLKDQISQEASKAALKLLVELCSWGRNRIKAVECGGVLVLIDLLLVLDHVSQRRACELMLVALDRLCGCAEGRAELVNHGAGVAVVAKKILRVSHAASDKGVKILFSICRNSATPRVLNEMLLFGAVSKLCLVLQMEGNSKAKERARETLKLHSMRSSHECVIVSEKRPRWILVGSAELFAEQDAFNV 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0707 413 Pfam U-box domain 6 80 IPR003613 GO:0004842|GO:0016567
Aed5g0707 413 CDD RING-Ubox_PUB 10 54 IPR045210 -
Aed5g0707 413 SUPERFAMILY RING/U-box 3 84 - -
Aed5g0707 413 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Aed5g0707 413 PANTHER OS11G0573500 PROTEIN 1 387 - -
Aed5g0707 413 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Aed5g0707 413 Gene3D - 89 393 IPR011989 -
Aed5g0707 413 PANTHER WDSAM1 PROTEIN 1 387 IPR045185 GO:0061630
Aed5g0707 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 80 IPR013083 -
Aed5g0707 413 SUPERFAMILY ARM repeat 103 365 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0707 Aed-Chr5 5241912 5243608 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0707 2 379 U-box Gene Family AT2G35930 50.646 2.72e-132 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0707 - - var:108340160 577.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0707 5 5241912 5243608 Aed5g0707 5 5241912 5243608 ECH
Aed1g0978 1 10055278 10056480 Aed5g0707 5 5241912 5243608 PCT