Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0706 ATGGCAGAAGTTGAGATTCCTCAATATTTTGTTTGTCCCATATCGTTTCAGATCATGGAGGATCCTGTGACTGCTGTGACAGGCATAACATATGATAGAGAAAGCATAGAGCAATGGTTGCTTAAGGCCAAAGAATGTGTGTGTCCTGTTACAAAGCAACCATTGCCAAGAAGCCCGCAATACTTAACCCCTAACCACACACTTCGGAGGCTGATTCAAGCGTGGTGCTCAGCCAACACTGCCAATGGTGTTGACCGAATTCCAACTCCGAAAACCCCTTTGAGCATGCTCCATGTTCAGAATCTTCTCAAGGGTCTTGAGGTTGAGGCTAATCATCATTCTTTTCAAACATCGTTGGAGAAGCTGCATGCTTTGGCTTCAAACGAGAGGAACAGAACTTGCATGGCTGAGGCTGGTGTAGCCAAGGCCATGATCCAAGTTATTCACAAGAGTTTCAAAGAAGGAAACACCACTTGTGTAGAGAAAGCTTTGAGAGTTGTTCATGTTCTTTGGAGCAATGATCATAGCTTGATGAAGAGTCTAGTTGGGGAGAATTTGGACTTCATCAACTCTTTGACTTGGATTTTGGACAACAACAAGATGGTAAACGAAGCAATGCCCCTTTTGAAGTTGACAATCGAAGTTACAAATTCAACTCTTCTAGGAAGTTTAAGCCTTGAATTCTTCAAGGAAATGGTGAGAGTATTGAAAAATAGAGCACTCTCTCAACAAGCCATTAAATCAGCTTTGTGTGTGCTCATAGAAACAAGCACTTTAGGTAGAAACAGAACAAAGATTGTTGAAGCGGGTGCAGTGACACAACTCATAGAACTAGAGCTCGAAAAACCAGAAAAGAACATGACAGAGATCATATTCAACCTTCTGGCACTACTATGTTGTTGTGCTGAGGGGAGAGAACAGTTTCTGAAACACGCTGCGGGAATTGCAGTGGTTTCAAAGAGGATTCTGAGGGTTTCTGCAGCCACTGATGACAGAGCGGTTCATGTGTTTGGTGTGATTGCCAAGTTCTCAGCATCGAATGAGGCTGTGCTAGAGATGTTGAGGGTTGGAGCTGTGTCGAAGCTTTGCATGCTGATGCAAGCGGATTGTGGTTCTTATTTGAAAGACAAAGCAAGAGACATCCTTAGGTTGCACTCCAAAGTTTGGAACAATTCTCCTTGCATACAATTATCGATCGACGACGACCGCATCAAAAAGGGGAGATGA 1227 0.4344 MAEVEIPQYFVCPISFQIMEDPVTAVTGITYDRESIEQWLLKAKECVCPVTKQPLPRSPQYLTPNHTLRRLIQAWCSANTANGVDRIPTPKTPLSMLHVQNLLKGLEVEANHHSFQTSLEKLHALASNERNRTCMAEAGVAKAMIQVIHKSFKEGNTTCVEKALRVVHVLWSNDHSLMKSLVGENLDFINSLTWILDNNKMVNEAMPLLKLTIEVTNSTLLGSLSLEFFKEMVRVLKNRALSQQAIKSALCVLIETSTLGRNRTKIVEAGAVTQLIELELEKPEKNMTEIIFNLLALLCCCAEGREQFLKHAAGIAVVSKRILRVSAATDDRAVHVFGVIAKFSASNEAVLEMLRVGAVSKLCMLMQADCGSYLKDKARDILRLHSKVWNNSPCIQLSIDDDRIKKGR 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0706 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Aed5g0706 408 Pfam U-box domain 6 79 IPR003613 GO:0004842|GO:0016567
Aed5g0706 408 SUPERFAMILY ARM repeat 99 373 IPR016024 -
Aed5g0706 408 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Aed5g0706 408 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 398 - -
Aed5g0706 408 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Aed5g0706 408 PANTHER WDSAM1 PROTEIN 3 398 IPR045185 GO:0061630
Aed5g0706 408 SUPERFAMILY RING/U-box 3 84 - -
Aed5g0706 408 Gene3D - 96 387 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0706 Aed-Chr5 5229559 5231787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0706 3 399 U-box Gene Family AT3G11840 40.950 1.62e-101 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0706 - - gmx:100787426 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0706 5 5229559 5231787 Aed5g0706 5 5229559 5231787 ECH
Aed1g0979 1 10060436 10061668 Aed5g0706 5 5229559 5231787 PCT