Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0689 ATGCTTCCCTCCACATCTATATCCGAACCAAATTCCCTCCTTCACCTTCTTCTTCTTCTCTCTCTTCTTCTCTTCTTCTCTGTTTCTCTTTCTCATTCCCTCGTTTTCTGCTCTTTTTCTCTCTCCCGCTTTTTTCATTTTCCGACTCGCCAAACGCCCAGATCTCCCCCATTCCCTCCGATCCCCCTCCGCCGCCCATCGCCGCCCCGGCGGATGTCGGCCTCGCGCGCTCCCCCCGCCGGCGCCGCCGCTAACCCGCCGGACCAGATCATGCACTCCATGAAACGCCAACTCCCCTTCTCCTCCATGAAGCCACCCTTCGTCGCTGCCGGAGACTACCACCGCTTCGCCCCCGACCACCACCGCCACGACGCCTCCGCCGAAGCCATCGTCCTCAAGACTCCCCAACTGAAGCGGAAGAGTGAAGTGGCTGATTTCGAAGCTGATTCTGGTGATAGGATGACTCCTGGATCCAGTGAAGCAGCTAATAGTCCTTTTCAGACACCTGTATCAGGAAAGACAGGGAAGGGAGGAAAATCCTCAAGGGTGGCAAAATGCAACAGACTTGGAACTCAGACCCCAGGCTCAAATATTGGTTCTCCTTCAGGCAATAATCTCACTCCTGCTGGTCCATGTCGTTATGACAGCTCTTTAGGTCTGTTGACAAAGAAGTTCATCAATTTGATCAAACAAGCTGAAGATGGTATCCTTGATCTGAATAAAGCTGCTGACACGTTAGAGGTGCAAAAGAGGAGGATATATGATATAACAAATGTTCTTGAAGGGATTGGCCTTATAGAAAAGAAACTCAAGAACCGAATTCAATGGAAGGGACTGGACGTTTCAAGACCGGGTGAGGCTGATGATAGTTTTGCTAGTTTACAGGCAGAAGTTGAAAATTTAACAATGGAGGAGCGCCGGTTAGATGAACAAATAAGGGAGATGCAAGAAAGACTGCGGGATCTTAGTGAAGATGAAAACAATGAGAAGTTGCTTTTTGTTACTGAGGAAGATATAAAGAATTTGCCCTGCTTCCAGAATGAAACCTTGATAGCAATTAAAGCTCCTCATGGCACTACTTTGGAGGTCCCTGATCCTGACGAGGCTGTTGATTATCCGCAGAGGAGATACAGGATAGTCTTGAGAAGCACAATGGGCCCAATAGATCTTTACCTTGTCAGTCAATTTGAAGAAAAGTTTGAAGAGGTTAATGGTGTTGATGTTGCACCCAAACTTCCATCCAGTCCAGATGTTAACAAACATCAATCAACAGTGGTGGTCCCAGAGGATAGAGGGAAGGACATAGAAGTGCAGGGACAAGAAGTTCCTGGGCCTAGTTCAGATTATACTACCTCCCAGGATTTCGTGAGTGGTATCATGAAGATTGTTCCTTCAGATGTTGCTAGTGAAGCTGATTACTGGCTTTTATCGGATGCTGATGTTAGCATAACTGACATGTGGAGAACAGAACCGGGAGTTGAATGGAATGAACTGGATCCACTTCAAGAAGATTATTGTATGACTCGTGAGAATGCTACGATCCCAAGCCATCCTTCAAATGTAGGTGAAGTGTCTTCTGCATCTAAACCAACTGGAGGTTGA 1602 0.4744 MLPSTSISEPNSLLHLLLLLSLLLFFSVSLSHSLVFCSFSLSRFFHFPTRQTPRSPPFPPIPLRRPSPPRRMSASRAPPAGAAANPPDQIMHSMKRQLPFSSMKPPFVAAGDYHRFAPDHHRHDASAEAIVLKTPQLKRKSEVADFEADSGDRMTPGSSEAANSPFQTPVSGKTGKGGKSSRVAKCNRLGTQTPGSNIGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDSFASLQAEVENLTMEERRLDEQIREMQERLRDLSEDENNEKLLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDLYLVSQFEEKFEEVNGVDVAPKLPSSPDVNKHQSTVVVPEDRGKDIEVQGQEVPGPSSDYTTSQDFVSGIMKIVPSDVASEADYWLLSDADVSITDMWRTEPGVEWNELDPLQEDYCMTRENATIPSHPSNVGEVSSASKPTGG 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0689 533 MobiDBLite consensus disorder prediction 147 182 - -
Aed5g0689 533 Pfam E2F transcription factor CC-MB domain 294 394 IPR032198 GO:0046983
Aed5g0689 533 CDD E2F_DD 289 395 IPR032198 GO:0046983
Aed5g0689 533 MobiDBLite consensus disorder prediction 156 175 - -
Aed5g0689 533 MobiDBLite consensus disorder prediction 511 533 - -
Aed5g0689 533 MobiDBLite consensus disorder prediction 55 88 - -
Aed5g0689 533 Gene3D - 207 280 IPR036388 -
Aed5g0689 533 MobiDBLite consensus disorder prediction 512 533 - -
Aed5g0689 533 Pfam E2F/DP family winged-helix DNA-binding domain 215 278 IPR003316 GO:0005667|GO:0006355
Aed5g0689 533 Coils Coil 291 332 - -
Aed5g0689 533 PANTHER TRANSCRIPTION FACTOR E2FB 91 519 - -
Aed5g0689 533 SUPERFAMILY E2F-DP heterodimerization region 292 395 IPR037241 -
Aed5g0689 533 SMART E2F_TDP_2 213 278 IPR003316 GO:0005667|GO:0006355
Aed5g0689 533 Coils Coil 229 249 - -
Aed5g0689 533 Gene3D - 285 395 - -
Aed5g0689 533 SUPERFAMILY "Winged helix" DNA-binding domain 213 276 IPR036390 -
Aed5g0689 533 PANTHER TRANSCRIPTION FACTOR E2F 91 519 IPR015633 GO:0000978|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0689 Aed-Chr5 5050064 5056281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0689 93 532 E2F-DP Transcription Factor Family AT5G22220 56.716 1.81e-159 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Aed5g0689 E2F_CC-MB 4.3e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0689 K06620 - gmx:100819817 828.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0689 5 5050064 5056281 Aed5g0689 5 5050064 5056281 ECH