Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0661 ATGAAATCTAACTATAAAACCCTAACCCTAAACCCATTCGATTTTCTGATTCGGAATCGAAAGAAGAGAATGGCGGAGGCGGAGGAACTGCCCCGGACTATCGTGCGCCGCGTGGTGAAGGATAAGCTGTCTCGTTGCTCAGAAGACGGAGAAATTTCCATAAGCAAAGACGGTCTTCTCGCATTCTCCGAAAGCGGTAGGATCTTCATCCACTACCTTTCCGCAACGGCTAATGACATATGTAGGGAGTCAAAGAGGCAGATTATCAATGCTGAGGATGTTTTCAAAGCTCTTGAAGATACCGAGTTTCCTGAGTTTGTTCGCCCTCTAAGAGTTTCCCTTGAAGAGTTTAGGAAGAAGAATGCTGGAAAGAAAGCAACAGTATCAAAGGGAAAGGAAGATGAACCGAAAAAGAAAAGGAAATTGGAAGGTGAGGTTTCTGATAAAGTTGAATCATCTGATAAAGGCAAGGGTTCTGATAAAGTTGAGGGTTCTGATAATGATGAGGGTTCCGACGACCAATGA 525 0.44 MKSNYKTLTLNPFDFLIRNRKKRMAEAEELPRTIVRRVVKDKLSRCSEDGEISISKDGLLAFSESGRIFIHYLSATANDICRESKRQIINAEDVFKALEDTEFPEFVRPLRVSLEEFRKKNAGKKATVSKGKEDEPKKKRKLEGEVSDKVESSDKGKGSDKVEGSDNDEGSDDQ 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0661 174 PANTHER DNA POLYMERASE EPSILON SUBUNIT 3 20 169 - -
Aed5g0661 174 Coils Coil 81 101 - -
Aed5g0661 174 SUPERFAMILY Histone-fold 30 137 IPR009072 GO:0046982
Aed5g0661 174 Gene3D Histone, subunit A 19 172 IPR009072 GO:0046982
Aed5g0661 174 MobiDBLite consensus disorder prediction 121 165 - -
Aed5g0661 174 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 29 98 IPR003958 -
Aed5g0661 174 MobiDBLite consensus disorder prediction 121 174 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0661 30 130 CCAAT-HAP3 Transcription Factor Family AT4G14540 30.693 3.57e-10 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Aed5g0661 CBFD_NFYB_HMF 1.1e-06 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0661 K02326 - gmx:100306382 235.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0661 5 4856015 4857930 Aed5g0661 5 4856015 4857930 ECH