Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0660 ATGTACACTACTCATCAGCAGCAACATCAAGGAAAGAACATTCACTCTTCTTCTTCCAGAATGCCAATCCCTTCTGAGAGGCATATGTTCCTTCAAACAGGAAATGGTTCTGGTGATTCTGGACTTGTTCTCTCAACTGATGCTAAGCCTAGATTGAAATGGACACCTGATCTTCATGCCAGGTTTATAGAAGCTGTGCAGCAGTTAGGAGGAGCTGACAAGGCAACTCCAAAAACGGTGATGAAACTCATGGGGATTTCAGGGCTTACCTTATATCATCTCAAGAGCCATCTCCAGAAATACAGATTGAGCAAGAGTATGCATGGACAAAGTAACAATGCGACGCACAAAATAACCATAAATTCAGGTGCAGCAACAACAGATGAAAGACTCAGAGAAAACAACGGAACTCATATGAATAATTTAAATCTTGCCCCTCAGTCTACCAACAAAGATTTACACATAGGTGAGGCACTGCAGATGCAAATAGAGGTGCAGAGGAGACTAAATGAGCAACTTGAGGTGCAAAGACTCCTGCAGGTCCGTATAGAGGCTCAAGGAAAATACCTTCAGGCAGTGCTGGAGAAGGCTCAGGAAACACTTGGTAGACAGAATTTGGGAGTAGTAGGACTTGAAGCTGCAAAACTTCAACTTTCAGAGCTAGTGTCCAAAGTGTCCTCTCAGTGTCTGAATTCAGCATTTTCAGAGCTGAAGGAGATACAAGGATTCAGCCCCCACCACCAACACCAGCCAAATGCAAATGACTGTTCCATGGACAGTTGCCTCACATCCTGTGAGAAAGAGCAAGAGATCATACAAAATGGAGGGATAATGAGCTTAAGGCCATTCAATGTCCACACATTCATGGAAAGAAAGGAAGTCATAGAGGGTCCTAATCTTAATAACCTACCAAATTCTGACCTCAAGTGGTGTCATGATGATGATCCAGTGAAGAATTCGAAGAAGAAAAACAGCTTCCTCACCCCATTGAGCATGCATGCAGAAAGAAGAAGTCCAAGCAACTTGTCTATGAGCATTGGAGGACTTGAAGGAGAAACAACTGAGAATGGAAGCACCATTAAACAACTGGACTTGAATGGATTCAGTTGGAACTGA 1116 0.4319 MYTTHQQQHQGKNIHSSSSRMPIPSERHMFLQTGNGSGDSGLVLSTDAKPRLKWTPDLHARFIEAVQQLGGADKATPKTVMKLMGISGLTLYHLKSHLQKYRLSKSMHGQSNNATHKITINSGAATTDERLRENNGTHMNNLNLAPQSTNKDLHIGEALQMQIEVQRRLNEQLEVQRLLQVRIEAQGKYLQAVLEKAQETLGRQNLGVVGLEAAKLQLSELVSKVSSQCLNSAFSELKEIQGFSPHHQHQPNANDCSMDSCLTSCEKEQEIIQNGGIMSLRPFNVHTFMERKEVIEGPNLNNLPNSDLKWCHDDDPVKNSKKKNSFLTPLSMHAERRSPSNLSMSIGGLEGETTENGSTIKQLDLNGFSWN 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0660 371 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 6 359 IPR044848 GO:0003700
Aed5g0660 371 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 49 104 IPR006447 GO:0003677
Aed5g0660 371 PANTHER MYB-RELATED PROTEIN 2 6 359 - -
Aed5g0660 371 Gene3D - 48 106 - -
Aed5g0660 371 Pfam MYB-CC type transfactor, LHEQLE motif 154 200 IPR025756 -
Aed5g0660 371 MobiDBLite consensus disorder prediction 1 22 - -
Aed5g0660 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 106 IPR017930 -
Aed5g0660 371 Pfam Myb-like DNA-binding domain 51 102 IPR001005 -
Aed5g0660 371 SUPERFAMILY Homeodomain-like 48 104 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0660 Aed-Chr5 4835808 4841855 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0660 81 371 G2-like Transcription Factor Family AT3G04030 45.946 6.62e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aed5g0660 Myb_DNA-binding 2.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0660 - - gmx:100805237 593.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1019 1 10285142 10288164 Aed5g0660 5 4835808 4841855 PCT