Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0657 ATGGCGAGCCAAAGAATAGGAGAAACGGGTTTGTCTGAGTCAGGACCTTCAACTCACCATGTCCCTTATGGAATTCTTCATGGGATTAATACTTCATCATCAGGCCTAATGAATCAAGGGTCTGCTTTTGATTTTGGAGAGCTGGAAGAGGCTATTGTTCTGCAAGGAATTAAGATAAGAAATGATGAAGCCAAAGCATCAGCTTTATTCACAGGCAGGCCTTCAGCCACACTGGAAATGTTCCCTTCATGGCCAATGAGATTCCACCAAACCTCAAGAAGGAAAGGATCTGGTTCCACATCAGAGAGGCCACTTGATGCAAAGACACTGAGACGTTTAGCTCAAAACAGAGAAGCTGCAAGGAAAAGCCGTCTAAGGAAAAAGGCTTATGTGCAGCAACTTGAGTCAAGTAGATTAAAGCTCACTCATCTTGAACAAGACCTTCAAAGAGCACGCTCTCAGGGTGTGTTTATGGGATGTGGTGGTGCTGGTGGAAGTACAAGCTCTGGAGGTGCAATGTTTGACATGGAGTATGCAAGATGGTTAGAGGATGAGCAGCGGCACGTGGCGGAGCTCCGGTCGGGGCTACAGGTGGCGCTGTCAGACGGCGAACTGAGAGTAATTGTGGACGGATATCTGTCTCACTATGATGAGGTTTTCAGGCTCAAAGGGGTGGCTGCTAAAACAGATGTCTTTCATCTTATCAATGGCTTGTGGACTTCACCAGCTGAGAGATGCTTCCTCTGGATAGGTGGTTTTAGACCATCAGAACTCATCACTATGTTGATACCGCAGTTGGAGCCATTAGCGGAGCAGCAAATAATGGGAATATATGGACTCAAGCATTCAACACTGCAAGCAGAAGAGGCTCTCACTCAGGGTCTTGATCAGCTTCAGCAGTCTCTCGTCGACACCATCGCCAGCGGCCCCGCCCTCGTTGACGGTGTGCAACAGATGGTGGCAGCCATGGGCAAGCTTGCCAACCTCGAAGGATTTATTGGTCAGGCTGATAATTTGAGGCAACAAACACTTCACCAATTATGTAGATTACTTACAGTTCGTCAAGCAGCACGGTGTTTTCTTGTGATTGGAGAGTATTATGGCAGACTTAGAGCACTTAGTTCTCTTTGGGCATCAAGACCACGAGAGTAA 1152 0.4731 MASQRIGETGLSESGPSTHHVPYGILHGINTSSSGLMNQGSAFDFGELEEAIVLQGIKIRNDEAKASALFTGRPSATLEMFPSWPMRFHQTSRRKGSGSTSERPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTHLEQDLQRARSQGVFMGCGGAGGSTSSGGAMFDMEYARWLEDEQRHVAELRSGLQVALSDGELRVIVDGYLSHYDEVFRLKGVAAKTDVFHLINGLWTSPAERCFLWIGGFRPSELITMLIPQLEPLAEQQIMGIYGLKHSTLQAEEALTQGLDQLQQSLVDTIASGPALVDGVQQMVAAMGKLANLEGFIGQADNLRQQTLHQLCRLLTVRQAARCFLVIGEYYGRLRALSSLWASRPRE 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0657 383 Gene3D - 107 155 - -
Aed5g0657 383 MobiDBLite consensus disorder prediction 89 109 - -
Aed5g0657 383 ProSiteProfiles DOG1 domain profile. 171 380 IPR025422 GO:0006351|GO:0043565
Aed5g0657 383 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 106 150 IPR004827 GO:0003700|GO:0006355
Aed5g0657 383 Coils Coil 134 154 - -
Aed5g0657 383 PANTHER TRANSCRIPTION FACTOR TGA9 95 383 - -
Aed5g0657 383 SUPERFAMILY Leucine zipper domain 108 151 IPR046347 GO:0003700|GO:0006355
Aed5g0657 383 Pfam bZIP transcription factor 107 149 IPR004827 GO:0003700|GO:0006355
Aed5g0657 383 Pfam Seed dormancy control 188 263 IPR025422 GO:0006351|GO:0043565
Aed5g0657 383 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 111 126 IPR004827 GO:0003700|GO:0006355
Aed5g0657 383 PANTHER TRANSCRIPTION FACTOR TGA9 95 383 - -
Aed5g0657 383 SMART brlzneu 104 198 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0657 Aed-Chr5 4808799 4815019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0657 61 383 bZIP Transcription Factor Family AT1G08320 67.901 5.78e-161 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Aed5g0657 DOG1 1.6e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0657 5 4808799 4815019 Aed5g0657 5 4808799 4815019 ECH
Aed1g1023 1 10303702 10306791 Aed5g0657 5 4808799 4815019 PCT