Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0653 ATGGGTTTGATGGAGTGGTGCAATGTAGAGGACAATAAGAATAAGAATCTATACCTTCATCATGATCATGCTCCTACTTTCATTGAGTGGCTCAAACCATGTTCCTCATCTCCTACTAAATATTCATATGATCTAAATTCCAATATTATGACAACAATATCTTCATCTTCATCTTCTTCTCCTTCTTATTCTTATTCTTCTCTTACTCCCACTCATCATAGTGAGTTTGTTCAGGCTGAAACTATCCAATTCTTGCCAATTCTGAGTGAAAAGGCCTCATCAAAAGATGAAGTGATCAAAGAGGAGAAGGTTGAACAAGTGACTGTGGCTTTGCACATTGGATTGCCAGCTGTCACTACTACTAACAAAGAAGTTGATGATGATGAGAAGATGATTTTGCATGTTAAGGAAGAAGAAGAGACCTTAAAGAGAAGCTTCAATAATGGATGCTCCTTTAATCAAGATCAGAGAAGGTTTTGGATTCCAACTCCAGCACAGATCCTTGTTGGACCTATGCAGTTTGCTTGCTCCATATGTACCAAGACCTTCAATAGGTATAACAACATGCAGGTTAGTTCAATTGCTTGCTGA 591 0.3807 MGLMEWCNVEDNKNKNLYLHHDHAPTFIEWLKPCSSSPTKYSYDLNSNIMTTISSSSSSSPSYSYSSLTPTHHSEFVQAETIQFLPILSEKASSKDEVIKEEKVEQVTVALHIGLPAVTTTNKEVDDDEKMILHVKEEEETLKRSFNNGCSFNQDQRRFWIPTPAQILVGPMQFACSICTKTFNRYNNMQVSSIAC 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0653 196 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 19 191 - -
Aed5g0653 196 PANTHER ZINC FINGER PROTEIN WIP2 19 191 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0653 Aed-Chr5 4779632 4780222 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0653 24 191 C2H2 Transcription Factor Family AT1G08290 36.126 6.66e-24 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed5g0653 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0653 - - gmx:100802773 214.927