Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0652 ATGTTAAGGTTGCCATGCTATTGCTGTGCTCAAGGGTGCAAGAACAACATCAACCATCCAAGGGCCAAGCCTTTGAAGGACTTCAGAACCCTCCAAACTCACTACAAGAGAAAGCACGGCACAAAGCCATTCATGTGCAGAAAATGTGGCAAGACATTTGCAGTGAAAGGGGATTGGAGGACTCATGAGAAGAACTGTGGCAAGTTATGGTATTGCACTTGTGGCTCAGACTTCAAGCACAAGAGATCCCTTAAAGATCACGTTAGGTCCTTTGGAAAGGGACATAACCCTCATCCTCCCTTTCAAGCTTTTGAGGATGAGAAGGAATGCATCACCACGGGATCTGATGAAGATGATGTTAATGCATGCTAG 372 0.457 MLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHVRSFGKGHNPHPPFQAFEDEKECITTGSDEDDVNAC 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0652 123 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 1 119 - -
Aed5g0652 123 PANTHER ZINC FINGER PROTEIN WIP2 1 119 IPR043584 GO:0003700|GO:0010468
Aed5g0652 123 SUPERFAMILY beta-beta-alpha zinc fingers 30 64 IPR036236 -
Aed5g0652 123 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 64 IPR013087 -
Aed5g0652 123 Gene3D Classic Zinc Finger 3 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0652 Aed-Chr5 4777612 4777983 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0652 1 113 C2H2 Transcription Factor Family AT1G08290 82.609 5.10e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed5g0652 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0652 - - gmx:100788451 275.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0652 5 4777612 4777983 Aed5g0652 5 4777612 4777983 ECH
Aed1g1028 1 10333760 10338256 Aed5g0652 5 4777612 4777983 PCT