Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0644 ATGTATAGCAATTTCAAAGAGCAAGCAATAGAGTACGTGAAACAAGCGGTGGATGAAGACAATAAGGGAAACTACGCAAGAGCGTTTCAGCTTTACATGAACGCGTTGGAGTATTTCAAAACGCACCTCAAGTACGAGAAGAACCCCAAGATCAAGGAAGCAATCACGCAGAAATTCACCGAGTACCTCCGCCGGGCCGAGGAGATCCGGGCCGTCCTCGACGATGGGCCCGGCCCGGCCTCCAGCGGGGACGCCGCGGTCGCCACCAGGCCCAAGACGAAGCCTAAGGACGGAGGAGGCAAAGACGGCGACGGGGAGGATCCCGAGCAGTCCAAGCTCCGGGCCGGGCTCAACTCCGCGATTGTCAGAGAAAAGCCCAACGTCAAGTGGAACGACGTCGCCGGGCTTGAGAGCGCGAAACAGTCCTTGCAGGAAGCGGTTATCTTGCCCGTAAAGTTTCCGCAGTTCTTCACTGGTAAACGACGGCCTTGGAGAGCGTTTTTGTTGTACGGACCACCGGGAACAGGTAAATCATATTTGGCGAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGTGTTTCTTCGTCAGACCTTGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTGGTCTCAAATCTTTTCCAAATGGCTCGCGAGAGCGCACCTTCTATCATATTTGTTGATGAAATAGATTCTCTGTGTGGTCAGCGTGGAGAAGGGAATGAGAGTGAGGCTTCAAGGCGAATTAAAACTGAACTTCTGGTGCAGATGCAGGGTGTAGGACACAATGATCAGAAAGTTCTTGTTCTAGCAGCTACAAATACACCTTATGCTCTAGACCAGGCAATAAGGCGGCGTTTCGATAAGCGTATATACATACCCCTACCTGATTTAAAGGCTCGCCAACACATGTTCAAGGCATGGGCAATATACATATACATGATGGTGCACCTAGGAGATACTCCCCATAACTTGACTGAAAGTGATTTTGAACATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTTTTCTTTACAAATTCTGAGGGTATGTGGATCCCATGTGGACAAAAGCAACAAGGTGCAGTACAAACTACAATGCAGGATCTTGCTACGAAAGGACTTGCTTCTAAGATCCTGCCACCACCTATATCAAGAACAGATTTTGACAAAGTACTTGCTAGACAAAGACCGACGGTAAGCAAGAGTGACCTCGATGTTCATGAGAGATTCACAAAAGAGTTCGGAGAGGAAGGATAA 1332 0.4835 MYSNFKEQAIEYVKQAVDEDNKGNYARAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGPGPASSGDAAVATRPKTKPKDGGGKDGDGEDPEQSKLRAGLNSAIVREKPNVKWNDVAGLESAKQSLQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARESAPSIIFVDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKAWAIYIYMMVHLGDTPHNLTESDFEHLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFTNSEGMWIPCGQKQQGAVQTTMQDLATKGLASKILPPPISRTDFDKVLARQRPTVSKSDLDVHERFTKEFGEEG 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0644 443 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 439 IPR027417 -
Aed5g0644 443 SMART smart 2 79 IPR007330 -
Aed5g0644 443 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 443 - -
Aed5g0644 443 Gene3D - 299 423 - -
Aed5g0644 443 CDD AAA 134 297 - -
Aed5g0644 443 Gene3D - 126 431 IPR027417 -
Aed5g0644 443 ProSitePatterns AAA-protein family signature. 269 288 IPR003960 GO:0005524|GO:0016887
Aed5g0644 443 CDD MIT_VPS4 4 76 IPR045253 -
Aed5g0644 443 Gene3D - 6 75 - -
Aed5g0644 443 SUPERFAMILY MIT domain 2 76 IPR036181 -
Aed5g0644 443 Pfam ATPase family associated with various cellular activities (AAA) 168 297 IPR003959 GO:0005524|GO:0016887
Aed5g0644 443 PANTHER AAA DOMAIN-CONTAINING 1 443 - -
Aed5g0644 443 MobiDBLite consensus disorder prediction 90 111 - -
Aed5g0644 443 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Aed5g0644 443 MobiDBLite consensus disorder prediction 73 111 - -
Aed5g0644 443 SMART AAA_5 163 299 IPR003593 -
Aed5g0644 443 Pfam Vps4 C terminal oligomerisation domain 376 440 IPR015415 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0644 Aed-Chr5 4741495 4746480 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0644 162 364 Calmodulin-binding Proteins AT3G56690 35.122 3.59e-33 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0644 K12196 - gmx:100791614 812.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0644 5 4741495 4746480 Aed5g0644 5 4741495 4746480 ECH
Aed1g1030 1 10342968 10347633 Aed5g0644 5 4741495 4746480 ECH
Aed1g1030 1 10342968 10347633 Aed5g0644 5 4741495 4746480 PCT