Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0628 ATGAACGGCATTAATTTACGATTTTGTCACTGTTCCCAACTCCTCCTCCTCTCACCAAACCAGAATCCGCTTCATTGTTCGCAAACTGCGAAGTTGTTAACTCTGAGAAACCCAAACCCAACAACAACAGCAACCCCTTTTACCATTTCCTGCAAAAGCCGTTACTCTTCTTCAATTGGCGCGTCGATGGCCTCACCCTCCGTCACAGACACCACCGAAACGAAGCCGTTTTCAGTTCTCTTCGTGTGCCTCGGCAACATTTGCAGAAGCCCCGCTGCTGAAGGAGTCTTCACTGACTTAGTCAACAAAAGGAGCCTCAATTCCAAGTTCAATATCGATTCCGCTGGCACCATCAATTATCACGAGGGGAATGAAGCGGACTCGAGAATGAGGGCAGCTTCAAAGAGGCGTGGGATTCAGATAACTTCTATTTCGAGGCCAATCAAGCCCTCTGATTTCGACATATTTGAAGCCTTTAATAGATGGAAAGACAAACATTCTTTACCGGGCGACGCGCATAAAAAGGTTAAGTTGATGTGCTCCTATTGTAAGAAGCATGATGAAAGTGAAGTCCCGGATCCTTATTATGGCGGACAGCAAGGGTTTGAGAAGGTGTTGGATTTGCTTGAAGATGCTTGCGGATCATTACTCGAAACCATTTTGGCAGAAAACAAACATGTACAAGAATCCTAA 693 0.456 MNGINLRFCHCSQLLLLSPNQNPLHCSQTAKLLTLRNPNPTTTATPFTISCKSRYSSSIGASMASPSVTDTTETKPFSVLFVCLGNICRSPAAEGVFTDLVNKRSLNSKFNIDSAGTINYHEGNEADSRMRAASKRRGIQITSISRPIKPSDFDIFEAFNRWKDKHSLPGDAHKKVKLMCSYCKKHDESEVPDPYYGGQQGFEKVLDLLEDACGSLLETILAENKHVQES 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0628 230 Gene3D - 61 225 - -
Aed5g0628 230 CDD LMWPTP 78 218 - -
Aed5g0628 230 SUPERFAMILY Phosphotyrosine protein phosphatases I 75 220 IPR036196 -
Aed5g0628 230 Pfam Low molecular weight phosphotyrosine protein phosphatase 79 217 IPR023485 -
Aed5g0628 230 SMART LMWPc_2 77 219 IPR023485 -
Aed5g0628 230 PRINTS LMW phosphotyrosine protein phosphatase signature 191 206 IPR017867 GO:0004725|GO:0006470
Aed5g0628 230 PRINTS LMW phosphotyrosine protein phosphatase signature 79 96 IPR017867 GO:0004725|GO:0006470
Aed5g0628 230 PRINTS LMW phosphotyrosine protein phosphatase signature 122 138 IPR017867 GO:0004725|GO:0006470
Aed5g0628 230 PANTHER LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE-RELATED 38 225 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0628 6 224 Protein tyrosine phosphatase (PTP) family AT3G44620 52.107 1.95e-80 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0628 K25307 - gmx:100797254 362.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0628 5 4581476 4585291 Aed5g0628 5 4581476 4585291 ECH