Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0624 ATGGCGGCGAGAGAGAGGACAGTAGCTTCAAACCCTAGCAACGGAGAACGTGCAAAGGTAGTAGTGATTACGGGCCCCACCGCTTCCGGGAAGTCGAAGCTTGCCGTTGATTTAGCCTCTGATTTCCCCTCCGTGGAAGTAATCAACGCCGATTCCATGCAGGTCTACCGCGGCCTCGATGTTCTCACCAACAAAATCCCTCTCTCTCAACAAAACGGCGTGCCGCATCATCTATTGGGTACCGTAAGCCCCAACGTCGAATTCACAGCCAAAGCGTTTCGGGATTCTGCTATTCCGATTATTGATGATATATTGGCTCGTAACCACTTGCCTGTTATAGCTCTTGTGAGTCCGTTTCTTCTAGATGATTCTGCAGAAGATATGGATGAAAGCTGTTTGGGTGATTCACCTGGGTCTGGTAACAGTTTCATTGCTGAAAATGACGGTTTAAACAATAGTTATGACCTTCTTAAAGATATTGATCCAGTTGCAGCAAATAGAATCCATCCAAATAACCATAGAAAGATAAATCAATATATTGATCTGTACAATCGCACCGGTGTTCTTCCTAGCAAAATATTTCAAGGAAATGCAGCAGAGAAGTGGGGTCAAGTTGATAACTTAAGATATGATTGTTGTTTTATATGTGTGGATGCATCTCTCCCTGTACTGGACAGATATGTAGAGCAGAGGGTAGATTGCATGATGCAGGAGGGATTACTCAATGAAGTCTATGACATTTATAATTTGAATGCAGTTTATACTAGAGGTCTGCGGCAGGCCATTGGTGTCCGTGAATTTGAGCCTCTTCTTAGAACTTGTGTTGTCAAAGACATGTATGAAACAGAGAGGGAATTGACTGAAGGATCCAGCATAGAAAAGGGAGAGACATTATTTAATTGTAATTTGGTGGAGTTGGTGAGATCTTCCTCTAATACTGAATCCACGATTCTCTTGGAAGAAGCCATTGAAAAAGTAAAGCTAAATACCCGGAGACTTGTTCGCCGTCAGAAGAGGATGCTGAGTCGATTGCAAACACTGTTTGGTTGGAACATACACTATAATGGAAGCTTGCCATCCACCTTCGAGATGACGAGAAACGACAATGGGATGAAAATAGTCCAAAGGGACCTCTGGACTCAATACATATGCAAGGCCTGTGGGGATCGGGTGCTGAGAGGATTACATGAATGGGAACAACACAGACAAGGTCGAGGGCACCGAAAACGTATTTCAAGTCTTAAGAGCAAGGCACAACAAGTTCCTGGTTTCGTGGAAGATATGTTGTAA 1290 0.4372 MAARERTVASNPSNGERAKVVVITGPTASGKSKLAVDLASDFPSVEVINADSMQVYRGLDVLTNKIPLSQQNGVPHHLLGTVSPNVEFTAKAFRDSAIPIIDDILARNHLPVIALVSPFLLDDSAEDMDESCLGDSPGSGNSFIAENDGLNNSYDLLKDIDPVAANRIHPNNHRKINQYIDLYNRTGVLPSKIFQGNAAEKWGQVDNLRYDCCFICVDASLPVLDRYVEQRVDCMMQEGLLNEVYDIYNLNAVYTRGLRQAIGVREFEPLLRTCVVKDMYETERELTEGSSIEKGETLFNCNLVELVRSSSNTESTILLEEAIEKVKLNTRRLVRRQKRMLSRLQTLFGWNIHYNGSLPSTFEMTRNDNGMKIVQRDLWTQYICKACGDRVLRGLHEWEQHRQGRGHRKRISSLKSKAQQVPGFVEDML 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0624 429 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 221 350 - -
Aed5g0624 429 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 17 382 IPR039657 -
Aed5g0624 429 Gene3D Classic Zinc Finger 377 421 - -
Aed5g0624 429 CDD NK 20 73 - -
Aed5g0624 429 Gene3D - 141 197 - -
Aed5g0624 429 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 254 IPR027417 -
Aed5g0624 429 TIGRFAM miaA: tRNA dimethylallyltransferase 20 278 IPR018022 GO:0008033
Aed5g0624 429 Hamap tRNA dimethylallyltransferase [miaA]. 20 366 IPR018022 GO:0008033
Aed5g0624 429 Pfam IPP transferase 54 339 - -
Aed5g0624 429 Gene3D - 16 121 IPR027417 -
Aed5g0624 429 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 17 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0624 Aed-Chr5 4564920 4568968 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0624 11 416 C2H2 Transcription Factor Family AT2G27760 51.322 2.98e-147 425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0624 5 4564920 4568968 Aed5g0624 5 4564920 4568968 ECH